VQ10_ARATH
ID VQ10_ARATH Reviewed; 108 AA.
AC Q8VYI5; Q5PXT0; Q9M9F7;
DT 04-MAR-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2002, sequence version 1.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=VQ motif-containing protein 10 {ECO:0000303|PubMed:22535423};
DE Short=AtVQ10 {ECO:0000303|PubMed:22535423};
DE AltName: Full=Tobacco rattle virus-induced protein variant 1 {ECO:0000312|EMBL:AAV69753.1};
GN Name=VQ10 {ECO:0000303|PubMed:22535423};
GN Synonyms=TRI {ECO:0000312|EMBL:AAV69753.1};
GN OrderedLocusNames=At1g78410 {ECO:0000312|Araport:AT1G78410};
GN ORFNames=F3F9.8 {ECO:0000312|EMBL:AAF71810.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=15497401; DOI=10.1094/mpmi.2004.17.10.1086;
RA Fridborg I., Williams A., Yang A., MacFarlane S., Coutts K., Angell S.;
RT "Enhancer trapping identifies TRI, an Arabidopsis gene up-regulated by
RT pathogen infection.";
RL Mol. Plant Microbe Interact. 17:1086-1094(2004).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP INTERACTION WITH WRKY25; WRKY26 AND WRKY33, GENE FAMILY, AND NOMENCLATURE.
RX PubMed=22535423; DOI=10.1104/pp.112.196816;
RA Cheng Y., Zhou Y., Yang Y., Chi Y.J., Zhou J., Chen J.Y., Wang F., Fan B.,
RA Shi K., Zhou Y.H., Yu J.Q., Chen Z.;
RT "Structural and functional analysis of VQ motif-containing proteins in
RT Arabidopsis as interacting proteins of WRKY transcription factors.";
RL Plant Physiol. 159:810-825(2012).
CC -!- FUNCTION: May modulate WRKY transcription factor activities.
CC {ECO:0000250|UniProtKB:Q9M9F0}.
CC -!- SUBUNIT: Interacts with WRKY25, WRKY26 and WRKY33.
CC {ECO:0000269|PubMed:22535423}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250|UniProtKB:Q9M9F0}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF71810.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AY821790; AAV69753.1; -; mRNA.
DR EMBL; AY821791; AAV69754.1; -; mRNA.
DR EMBL; AC013430; AAF71810.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE36102.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM58670.1; -; Genomic_DNA.
DR EMBL; AY070754; AAL50092.1; -; mRNA.
DR EMBL; AY102135; AAM26702.1; -; mRNA.
DR EMBL; AY085552; AAM67305.1; -; mRNA.
DR PIR; F96812; F96812.
DR RefSeq; NP_001321086.1; NM_001334826.1.
DR RefSeq; NP_565179.1; NM_106488.3.
DR AlphaFoldDB; Q8VYI5; -.
DR STRING; 3702.AT1G78410.1; -.
DR PaxDb; Q8VYI5; -.
DR PRIDE; Q8VYI5; -.
DR DNASU; 844177; -.
DR EnsemblPlants; AT1G78410.1; AT1G78410.1; AT1G78410.
DR EnsemblPlants; AT1G78410.2; AT1G78410.2; AT1G78410.
DR GeneID; 844177; -.
DR Gramene; AT1G78410.1; AT1G78410.1; AT1G78410.
DR Gramene; AT1G78410.2; AT1G78410.2; AT1G78410.
DR KEGG; ath:AT1G78410; -.
DR Araport; AT1G78410; -.
DR TAIR; locus:2032050; AT1G78410.
DR eggNOG; ENOG502SFRK; Eukaryota.
DR HOGENOM; CLU_169898_0_0_1; -.
DR OMA; VEDFWID; -.
DR OrthoDB; 1503659at2759; -.
DR PhylomeDB; Q8VYI5; -.
DR PRO; PR:Q8VYI5; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q8VYI5; baseline and differential.
DR Genevisible; Q8VYI5; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0006979; P:response to oxidative stress; IMP:TAIR.
DR InterPro; IPR008889; VQ.
DR InterPro; IPR039608; VQ_1/10.
DR PANTHER; PTHR34777; PTHR34777; 1.
DR Pfam; PF05678; VQ; 1.
PE 1: Evidence at protein level;
KW Nucleus; Reference proteome.
FT CHAIN 1..108
FT /note="VQ motif-containing protein 10"
FT /id="PRO_0000432311"
FT REGION 65..85
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 29..38
FT /note="VQ"
FT /evidence="ECO:0000305"
FT CONFLICT 105..108
FT /note="Missing (in Ref. 1; AAV69754)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 108 AA; 11875 MW; D3CF6139B7EB575B CRC64;
MSGRGKVKSE PMKVVFINTQ YVETDARSFK TVVQELTGKN AIVAAGPFDS PSAFDGRCYD
GGSKIGEDTR QLHGGGGGGG RMGTTTEFDR LFKEMPHMEE LYKLWSEY
