VQ29_ARATH
ID VQ29_ARATH Reviewed; 123 AA.
AC Q9SZG3; Q8LDF4;
DT 04-MAR-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 117.
DE RecName: Full=VQ motif-containing protein 29 {ECO:0000303|PubMed:22535423};
DE Short=AtVQ29 {ECO:0000303|PubMed:22535423};
GN Name=VQ29 {ECO:0000303|PubMed:22535423};
GN OrderedLocusNames=At4g37710 {ECO:0000312|Araport:AT4G37710};
GN ORFNames=F19F18.200 {ECO:0000312|EMBL:CAB38310.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Bautista V.R., Kim C.J., Chen H., Quinitio C., Ecker J.R.;
RT "Arabidopsis ORF Clones.";
RL Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP FUNCTION, GENE FAMILY, AND NOMENCLATURE.
RX PubMed=22535423; DOI=10.1104/pp.112.196816;
RA Cheng Y., Zhou Y., Yang Y., Chi Y.J., Zhou J., Chen J.Y., Wang F., Fan B.,
RA Shi K., Zhou Y.H., Yu J.Q., Chen Z.;
RT "Structural and functional analysis of VQ motif-containing proteins in
RT Arabidopsis as interacting proteins of WRKY transcription factors.";
RL Plant Physiol. 159:810-825(2012).
CC -!- FUNCTION: May function as negative regulator of flowering transition.
CC {ECO:0000305|PubMed:22535423}.
CC -!- INTERACTION:
CC Q9SZG3; Q17TI5: BRX; NbExp=3; IntAct=EBI-25517843, EBI-4426649;
CC Q9SZG3; Q8GY11: WRKY43; NbExp=3; IntAct=EBI-25517843, EBI-1235953;
CC Q9SZG3; Q8VWQ4: WRKY56; NbExp=3; IntAct=EBI-25517843, EBI-25517688;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250|UniProtKB:Q9M9F0}.
CC -!- MISCELLANEOUS: Plants over-expressing VQ29 have delayed flowering.
CC {ECO:0000269|PubMed:22535423}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAM63239.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; AL035605; CAB38310.1; -; Genomic_DNA.
DR EMBL; AL161592; CAB80436.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE86830.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM67051.1; -; Genomic_DNA.
DR EMBL; BT029306; ABK32120.1; -; mRNA.
DR EMBL; AY086029; AAM63239.1; ALT_INIT; mRNA.
DR PIR; T04728; T04728.
DR RefSeq; NP_001320154.1; NM_001342455.1.
DR RefSeq; NP_195485.1; NM_119933.3.
DR AlphaFoldDB; Q9SZG3; -.
DR IntAct; Q9SZG3; 3.
DR STRING; 3702.AT4G37710.1; -.
DR PaxDb; Q9SZG3; -.
DR PRIDE; Q9SZG3; -.
DR EnsemblPlants; AT4G37710.1; AT4G37710.1; AT4G37710.
DR EnsemblPlants; AT4G37710.2; AT4G37710.2; AT4G37710.
DR GeneID; 829927; -.
DR Gramene; AT4G37710.1; AT4G37710.1; AT4G37710.
DR Gramene; AT4G37710.2; AT4G37710.2; AT4G37710.
DR KEGG; ath:AT4G37710; -.
DR Araport; AT4G37710; -.
DR TAIR; locus:2120076; AT4G37710.
DR HOGENOM; CLU_2018360_0_0_1; -.
DR InParanoid; Q9SZG3; -.
DR OMA; PANISGW; -.
DR OrthoDB; 1635666at2759; -.
DR PhylomeDB; Q9SZG3; -.
DR PRO; PR:Q9SZG3; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9SZG3; baseline and differential.
DR Genevisible; Q9SZG3; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0071456; P:cellular response to hypoxia; IEP:TAIR.
DR GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
DR InterPro; IPR008889; VQ.
DR InterPro; IPR039610; VQ29.
DR PANTHER; PTHR34794; PTHR34794; 1.
DR Pfam; PF05678; VQ; 1.
PE 1: Evidence at protein level;
KW Flowering; Nucleus; Reference proteome.
FT CHAIN 1..123
FT /note="VQ motif-containing protein 29"
FT /id="PRO_0000432320"
FT REGION 24..55
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 77..123
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 66..75
FT /note="VQ"
FT /evidence="ECO:0000305"
FT COMPBIAS 90..123
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 20
FT /note="T -> A (in Ref. 4; AAM63239)"
FT /evidence="ECO:0000305"
FT CONFLICT 47
FT /note="I -> ISS (in Ref. 4; AAM63239)"
FT /evidence="ECO:0000305"
FT CONFLICT 68
FT /note="V -> E (in Ref. 4; AAM63239)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 123 AA; 13809 MW; 1A3CCF94E80D7240 CRC64;
MEATSQQFMS QSYLNAQETT TRATKNYLTS LHSTRKQPSK PLKRPAISSP LNPMHPHVYR
VEPVNFKVLV QRLTGAPEHE TVQAKPLKTS DDAAKQSSSS FAFDPSSSWG DFSFQNPANI
SRW
