VSP2_ARATH
ID VSP2_ARATH Reviewed; 265 AA.
AC O82122; O23828;
DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1998, sequence version 1.
DT 03-AUG-2022, entry version 144.
DE RecName: Full=Vegetative storage protein 2;
DE Flags: Precursor;
GN Name=VSP2; OrderedLocusNames=At5g24770; ORFNames=T4C12.50;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia; TISSUE=Flower bud;
RX PubMed=8980528; DOI=10.1007/bf00020217;
RA Utsugi S., Sakamoto W., Ogura Y., Murata M., Motoyoshi F.;
RT "Isolation and characterization of cDNA clones corresponding to the genes
RT expressed preferentially in floral organs of Arabidopsis thaliana.";
RL Plant Mol. Biol. 32:759-765(1996).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=9747802; DOI=10.1023/a:1006072014605;
RA Utsugi S., Sakamoto W., Murata M., Motoyoshi F.;
RT "Arabidopsis thaliana vegetative storage protein (VSP) genes: gene
RT organization and tissue-specific expression.";
RL Plant Mol. Biol. 38:565-576(1998).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- FUNCTION: May function as somatic storage protein during early seedling
CC development. {ECO:0000250}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=O82122-1; Sequence=Displayed;
CC -!- TISSUE SPECIFICITY: Highly expressed in flowers, but also found in
CC leaves, vegetative shoots, petioles, peduncles, and receptacles of
CC floral organs.
CC -!- INDUCTION: Expression is enhanced during wounding.
CC -!- SIMILARITY: Belongs to the APS1/VSP family. {ECO:0000305}.
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DR EMBL; AB006778; BAA33447.1; -; Genomic_DNA.
DR EMBL; D85191; BAA22096.1; -; mRNA.
DR EMBL; AL392145; CAC08251.1; -; Genomic_DNA.
DR EMBL; CP002688; AED93358.1; -; Genomic_DNA.
DR EMBL; AY048282; AAK82544.1; -; mRNA.
DR EMBL; AY050819; AAK92754.1; -; mRNA.
DR EMBL; AY092991; AAM12990.1; -; mRNA.
DR EMBL; AY114083; AAM45131.1; -; mRNA.
DR EMBL; AY114606; AAM47925.1; -; mRNA.
DR EMBL; BT000761; AAN31900.1; -; mRNA.
DR EMBL; BT000762; AAN31901.1; -; mRNA.
DR EMBL; BT006341; AAP21149.1; -; mRNA.
DR RefSeq; NP_568454.1; NM_122386.4. [O82122-1]
DR AlphaFoldDB; O82122; -.
DR SMR; O82122; -.
DR BioGRID; 17821; 1.
DR STRING; 3702.AT5G24770.1; -.
DR iPTMnet; O82122; -.
DR SWISS-2DPAGE; O82122; -.
DR PaxDb; O82122; -.
DR PRIDE; O82122; -.
DR ProteomicsDB; 242631; -. [O82122-1]
DR EnsemblPlants; AT5G24770.1; AT5G24770.1; AT5G24770. [O82122-1]
DR GeneID; 832546; -.
DR Gramene; AT5G24770.1; AT5G24770.1; AT5G24770. [O82122-1]
DR KEGG; ath:AT5G24770; -.
DR Araport; AT5G24770; -.
DR TAIR; locus:2184580; AT5G24770.
DR eggNOG; ENOG502QU6T; Eukaryota.
DR HOGENOM; CLU_053338_1_1_1; -.
DR InParanoid; O82122; -.
DR OMA; HNATAFK; -.
DR OrthoDB; 1100106at2759; -.
DR PhylomeDB; O82122; -.
DR BioCyc; ARA:AT5G24770-MON; -.
DR PRO; PR:O82122; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; O82122; baseline and differential.
DR Genevisible; O82122; AT.
DR GO; GO:0022626; C:cytosolic ribosome; HDA:TAIR.
DR GO; GO:0000325; C:plant-type vacuole; HDA:TAIR.
DR GO; GO:0003993; F:acid phosphatase activity; IDA:TAIR.
DR GO; GO:0045735; F:nutrient reservoir activity; IEA:UniProtKB-KW.
DR GO; GO:0002213; P:defense response to insect; IDA:TAIR.
DR GO; GO:0046688; P:response to copper ion; IEP:TAIR.
DR GO; GO:0009625; P:response to insect; IEP:TAIR.
DR GO; GO:0009753; P:response to jasmonic acid; TAS:TAIR.
DR GO; GO:0006979; P:response to oxidative stress; IEP:TAIR.
DR GO; GO:0009611; P:response to wounding; IEP:TAIR.
DR Gene3D; 3.40.50.1000; -; 1.
DR InterPro; IPR005519; Acid_phosphat_B-like.
DR InterPro; IPR010028; Acid_phosphatase_pln.
DR InterPro; IPR014403; APS1/VSP.
DR InterPro; IPR036412; HAD-like_sf.
DR InterPro; IPR023214; HAD_sf.
DR Pfam; PF03767; Acid_phosphat_B; 1.
DR PIRSF; PIRSF002674; VSP; 1.
DR SUPFAM; SSF56784; SSF56784; 1.
DR TIGRFAMs; TIGR01675; plant-AP; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Glycoprotein; Reference proteome; Signal;
KW Storage protein.
FT SIGNAL 1..18
FT /evidence="ECO:0000255"
FT CHAIN 19..265
FT /note="Vegetative storage protein 2"
FT /id="PRO_0000023988"
FT CARBOHYD 110
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 188
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 210
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CONFLICT 11..13
FT /note="LLA -> VLG (in Ref. 1; BAA22096)"
FT /evidence="ECO:0000305"
FT CONFLICT 18
FT /note="A -> V (in Ref. 1; BAA22096)"
FT /evidence="ECO:0000305"
FT CONFLICT 23
FT /note="L -> V (in Ref. 1; BAA22096)"
FT /evidence="ECO:0000305"
FT CONFLICT 162..164
FT /note="ALH -> GLY (in Ref. 1; BAA22096)"
FT /evidence="ECO:0000305"
FT CONFLICT 181
FT /note="D -> V (in Ref. 1; BAA22096)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 265 AA; 29842 MW; A7D810C311177409 CRC64;
MKILSLSLLL LLAATVSASV PGLIELVDSK TIFGNVAELL EKEKLSINYA NCRSWHLGVE
TSNIIDFDTV PANCKDYVED YLITSKQYQY DSKTVCKEAY FYAKGLALKN DTVNVWIFDL
DDTLLSSIPY YAKYGYGTEK TDPGAYWLWL GTGASTPGLP EALHLYQNII ELGIEPIILS
DRWKLWKNVT LDNLEAAGVT YWKHLILKPN GSNLRQVVYK SKVRKSLVKK GYNIVGNIGD
QWADLVEDTP GRVFKLPNPL YYVPS
