WOX11_ORYSJ
ID WOX11_ORYSJ Reviewed; 262 AA.
AC Q0D3I7; B7E8P2;
DT 23-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT 17-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 101.
DE RecName: Full=WUSCHEL-related homeobox 11 {ECO:0000303|PubMed:17351053};
DE Short=OsWOX11 {ECO:0000303|PubMed:17351053};
GN Name=WOX11 {ECO:0000303|PubMed:17351053};
GN OrderedLocusNames=Os07g0684900 {ECO:0000312|EMBL:BAT03276.1},
GN LOC_Os07g48560 {ECO:0000305};
GN ORFNames=OsJ_25623 {ECO:0000312|EMBL:EEE67836.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP NOMENCLATURE.
RX PubMed=17351053; DOI=10.1104/pp.107.095737;
RA Dai M., Hu Y., Zhao Y., Liu H., Zhou D.-X.;
RT "A WUSCHEL-LIKE HOMEOBOX gene represses a YABBY gene expression required
RT for rice leaf development.";
RL Plant Physiol. 144:380-390(2007).
RN [7]
RP FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, DEVELOPMENTAL STAGE,
RP INDUCTION BY AUXIN, AND DISRUPTION PHENOTYPE.
RX PubMed=19258439; DOI=10.1105/tpc.108.061655;
RA Zhao Y., Hu Y., Dai M., Huang L., Zhou D.X.;
RT "The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-
RT borne crown root development in rice.";
RL Plant Cell 21:736-748(2009).
RN [8]
RP FUNCTION, INTERACTION WITH ERF3, DISRUPTION PHENOTYPE, SUBCELLULAR
RP LOCATION, TISSUE SPECIFICITY, AND DEVELOPMENTAL STAGE.
RC STRAIN=cv. Zhonghua 11;
RX PubMed=26307379; DOI=10.1105/tpc.15.00227;
RA Zhao Y., Cheng S., Song Y., Huang Y., Zhou S., Liu X., Zhou D.X.;
RT "The interaction between rice ERF3 and WOX11 promotes crown root
RT development by regulating gene expression involved in cytokinin
RT signaling.";
RL Plant Cell 27:2469-2483(2015).
RN [9]
RP FUNCTION.
RX PubMed=28830102; DOI=10.1093/jxb/erx153;
RA Jiang W., Zhou S., Zhang Q., Song H., Zhou D.X., Zhao Y.;
RT "Transcriptional regulatory network of WOX11 is involved in the control of
RT crown root development, cytokinin signals, and redox in rice.";
RL J. Exp. Bot. 68:2787-2798(2017).
RN [10]
RP FUNCTION, AND INTERACTION WITH ADA2.
RX PubMed=28487409; DOI=10.1105/tpc.16.00908;
RA Zhou S., Jiang W., Long F., Cheng S., Yang W., Zhao Y., Zhou D.X.;
RT "Rice homeodomain protein WOX11 recruits a histone acetyltransferase
RT complex to establish programs of cell proliferation of crown root
RT meristem.";
RL Plant Cell 29:1088-1104(2017).
RN [11]
RP FUNCTION.
RX PubMed=29740464; DOI=10.3389/fpls.2018.00523;
RA Zhang T., Li R., Xing J., Yan L., Wang R., Zhao Y.;
RT "The YUCCA-auxin-WOX11 module controls crown root development in rice.";
RL Front. Plant Sci. 9:523-523(2018).
CC -!- FUNCTION: Transcription factor involved in crown root development
CC (PubMed:19258439, PubMed:26307379, PubMed:29740464). Promotes the
CC development of crown roots (both initiation and elongation), main
CC components of the fibrous root system (PubMed:19258439,
CC PubMed:26307379, PubMed:29740464). Regulates the expression of genes
CC required for crown root development, and hormone-responsive genes
CC involved in cytokinin signaling (e.g. RR1, RR2, RR3 and RR4), and auxin
CC signaling (e.g. IAA5, IAA11, IAA23 and IAA31) (PubMed:26307379).
CC Functions dowstream of the auxin biosynthetic genes YUCCA1 in the
CC promotion of crown root development (PubMed:29740464). Recruits the
CC ADA2-GCN5 histone acetyltransferase (HAT) module to regulate crown root
CC cell proliferation and stem cell maintenance of root meristem
CC (PubMed:28487409). Together with the ADA2-GCN5 HAT module targets and
CC regulates a set of root-specific genes involved in carbon metabolism,
CC cell wall biosynthesis, and auxin transport and response
CC (PubMed:28487409). Functions upstream of several genes controlling root
CC development, cytokinin homeostasis/signaling, stress response, and
CC redox metabolic processes (PubMed:28830102).
CC {ECO:0000269|PubMed:19258439, ECO:0000269|PubMed:26307379,
CC ECO:0000269|PubMed:28487409, ECO:0000269|PubMed:28830102,
CC ECO:0000269|PubMed:29740464}.
CC -!- SUBUNIT: Interacts with ERF3 (PubMed:26307379). Interacts (via N-
CC terminus) with ADA2 (PubMed:28487409). {ECO:0000269|PubMed:26307379,
CC ECO:0000269|PubMed:28487409}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00108,
CC ECO:0000269|PubMed:19258439, ECO:0000269|PubMed:26307379}.
CC -!- TISSUE SPECIFICITY: Expressed in crown roots (PubMed:19258439,
CC PubMed:26307379). Expressed in the shoot apical meristem (SAM), leaf
CC primordia, and young leaves (PubMed:26307379).
CC {ECO:0000269|PubMed:19258439, ECO:0000269|PubMed:26307379}.
CC -!- DEVELOPMENTAL STAGE: In crown roots, mainly expressed after crown roots
CC emergence but barely in crown root initials.
CC {ECO:0000269|PubMed:19258439, ECO:0000269|PubMed:26307379}.
CC -!- INDUCTION: Induced by auxin. {ECO:0000269|PubMed:19258439}.
CC -!- DISRUPTION PHENOTYPE: Reduced crown root development (PubMed:19258439,
CC PubMed:26307379). Severe growth defects and lethality in adult plants
CC (PubMed:19258439). {ECO:0000269|PubMed:19258439,
CC ECO:0000269|PubMed:26307379}.
CC -!- MISCELLANEOUS: Overexpression of WOX11 stimulates ectopic crown root
CC development. {ECO:0000269|PubMed:29740464}.
CC -!- SIMILARITY: Belongs to the WUS homeobox family. {ECO:0000305}.
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DR EMBL; AP008213; BAF22586.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT03276.1; -; Genomic_DNA.
DR EMBL; CM000144; EEE67836.1; -; Genomic_DNA.
DR EMBL; AK063503; BAG88739.1; -; mRNA.
DR EMBL; AK073232; BAG93352.1; -; mRNA.
DR RefSeq; XP_015645719.1; XM_015790233.1.
DR AlphaFoldDB; Q0D3I7; -.
DR SMR; Q0D3I7; -.
DR STRING; 4530.OS07T0684900-01; -.
DR PaxDb; Q0D3I7; -.
DR PRIDE; Q0D3I7; -.
DR EnsemblPlants; Os07t0684900-01; Os07t0684900-01; Os07g0684900.
DR GeneID; 4344325; -.
DR Gramene; Os07t0684900-01; Os07t0684900-01; Os07g0684900.
DR KEGG; osa:4344325; -.
DR eggNOG; ENOG502QUIQ; Eukaryota.
DR HOGENOM; CLU_030463_0_0_1; -.
DR InParanoid; Q0D3I7; -.
DR OMA; GHHLMAD; -.
DR OrthoDB; 1267244at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000007752; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR Genevisible; Q0D3I7; OS.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0048830; P:adventitious root development; IEA:InterPro.
DR GO; GO:0010311; P:lateral root formation; IMP:UniProtKB.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR044558; WOX11-like.
DR PANTHER; PTHR46998; PTHR46998; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR SMART; SM00389; HOX; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
PE 1: Evidence at protein level;
KW Developmental protein; DNA-binding; Homeobox; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..262
FT /note="WUSCHEL-related homeobox 11"
FT /id="PRO_0000308648"
FT DNA_BIND 18..82
FT /note="Homeobox; WUS-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT REGION 1..21
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 79..115
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 83..105
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 262 AA; 27588 MW; B9A5B658D14071A5 CRC64;
MDGGHSPDRH AAAAAGEPVR SRWTPKPEQI LILESIFNSG MVNPPKDETV RIRKLLERFG
AVGDANVFYW FQNRRSRSRR RQRQLQAQAQ AAAAAASSGS PPTASSGGLA PGHAGSPASS
LGMFAHGAAG YSSSSSSSWP SSPPSVGMMM GDVDYGGGGD DLFAISRQMG YMDGGGGSSS
SAAAGQHQQQ QLYYSCQPAT MTVFINGVAT EVPRGPIDLR SMFGQDVMLV HSTGALLPAN
EYGILLHSLQ MGESYFLVTR SS
