WOX3_ORYSJ
ID WOX3_ORYSJ Reviewed; 203 AA.
AC Q33DK1; A0A0P0XY78; A0AAS9;
DT 23-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT 06-DEC-2005, sequence version 1.
DT 03-AUG-2022, entry version 108.
DE RecName: Full=WUSCHEL-related homeobox 3;
DE AltName: Full=OsNS;
DE AltName: Full=OsWOX3;
GN Name=WOX3; OrderedLocusNames=Os11g0102100, LOC_Os11g01130;
GN and
GN OrderedLocusNames=Os12g0101600, LOC_Os12g01120; ORFNames=OsJ_031341;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Taichung 65; TISSUE=Flower;
RX PubMed=16284419; DOI=10.1266/ggs.80.261;
RA Nagasaki H., Matsuoka M., Sato Y.;
RT "Members of TALE and WUS subfamilies of homeodomain proteins with
RT potentially important functions in development form dimers within each
RT subfamily in rice.";
RL Genes Genet. Syst. 80:261-267(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 4-68.
RX PubMed=16987950; DOI=10.1093/molbev/msl125;
RA Nardmann J., Werr W.;
RT "The shoot stem cell niche in angiosperms: expression patterns of WUS
RT orthologues in rice and maize imply major modifications in the course of
RT mono- and dicot evolution.";
RL Mol. Biol. Evol. 23:2492-2504(2006).
RN [8]
RP FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND NOMENCLATURE.
RX PubMed=17351053; DOI=10.1104/pp.107.095737;
RA Dai M., Hu Y., Zhao Y., Liu H., Zhou D.-X.;
RT "A WUSCHEL-LIKE HOMEOBOX gene represses a YABBY gene expression required
RT for rice leaf development.";
RL Plant Physiol. 144:380-390(2007).
CC -!- FUNCTION: Transcription factor which may be involved in developmental
CC processes. Seems to act as repressor of YAB5.
CC {ECO:0000269|PubMed:17351053}.
CC -!- INTERACTION:
CC Q33DK1; Q7XM13: WOX1; NbExp=3; IntAct=EBI-1100563, EBI-1100547;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00108,
CC ECO:0000269|PubMed:17351053}.
CC -!- TISSUE SPECIFICITY: Expressed in leaf primordia, young leaves, floret
CC meristems, floral organ primordia (except carpel primordium), stamens
CC and carpels. Does not show polar expression pattern.
CC {ECO:0000269|PubMed:17351053}.
CC -!- SIMILARITY: Belongs to the WUS homeobox family. {ECO:0000305}.
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DR EMBL; AB218893; BAE48302.1; -; mRNA.
DR EMBL; DP000010; ABA91096.1; -; Genomic_DNA.
DR EMBL; DP000011; ABA95570.1; -; Genomic_DNA.
DR EMBL; AP008217; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AP008218; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AP014967; BAT12270.1; -; Genomic_DNA.
DR EMBL; AP014968; BAT15447.1; -; Genomic_DNA.
DR EMBL; CM000148; EAZ17132.1; -; Genomic_DNA.
DR EMBL; AM234748; CAJ84140.1; -; mRNA.
DR RefSeq; XP_015616762.1; XM_015761276.1.
DR RefSeq; XP_015619606.1; XM_015764120.1.
DR AlphaFoldDB; Q33DK1; -.
DR SMR; Q33DK1; -.
DR IntAct; Q33DK1; 1.
DR STRING; 4530.OS11T0102100-00; -.
DR PaxDb; Q33DK1; -.
DR PRIDE; Q33DK1; -.
DR EnsemblPlants; Os11t0102100-02; Os11t0102100-02; Os11g0102100.
DR EnsemblPlants; Os12t0101600-02; Os12t0101600-02; Os12g0101600.
DR GeneID; 107275468; -.
DR GeneID; 107276476; -.
DR Gramene; Os11t0102100-02; Os11t0102100-02; Os11g0102100.
DR Gramene; Os12t0101600-02; Os12t0101600-02; Os12g0101600.
DR KEGG; osa:107275468; -.
DR KEGG; osa:107276476; -.
DR eggNOG; ENOG502S13K; Eukaryota.
DR HOGENOM; CLU_070454_1_0_1; -.
DR InParanoid; Q33DK1; -.
DR OrthoDB; 1551465at2759; -.
DR BRENDA; 1.14.13.79; 8948.
DR BRENDA; 1.14.14.107; 8948.
DR Proteomes; UP000000763; Chromosome 11.
DR Proteomes; UP000000763; Chromosome 12.
DR Proteomes; UP000007752; Chromosome 11.
DR Proteomes; UP000059680; Chromosome 11.
DR Proteomes; UP000059680; Chromosome 12.
DR Genevisible; Q33DK1; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0099402; P:plant organ development; IEA:InterPro.
DR CDD; cd00086; homeodomain; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR044555; WUSCHEL-like.
DR PANTHER; PTHR45940; PTHR45940; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR SMART; SM00389; HOX; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
PE 1: Evidence at protein level;
KW Developmental protein; DNA-binding; Homeobox; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..203
FT /note="WUSCHEL-related homeobox 3"
FT /id="PRO_0000308637"
FT DNA_BIND 4..68
FT /note="Homeobox; WUS-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT REGION 73..95
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 109..135
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 180..203
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 203 AA; 22352 MW; FB36267C29FEF655 CRC64;
MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAEIQQITA HLAYYGRIEG KNVFYWFQNH
KARERQRLRR RLCARHQQQP SPPSSTVPPA PTAAAAGAVV QVHPAVMQLH HHHHHHHPYA
AAAAAQSHHL QQQQQQQAEW PAAVDYCSTA SASASATAAD MAIPPCCRPL KTLELFPTKS
TSGGLKEDCC SSSKSSSCST STN
