WOX5_ORYSJ
ID WOX5_ORYSJ Reviewed; 313 AA.
AC Q8LR86; A0AAT0;
DT 13-NOV-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2002, sequence version 1.
DT 03-AUG-2022, entry version 126.
DE RecName: Full=WUSCHEL-related homeobox 5;
DE AltName: Full=OsWOX5;
DE AltName: Full=Protein WOX2;
GN Name=WOX5; OrderedLocusNames=Os01g0840300, LOC_Os01g62310;
GN ORFNames=P0408C03.23;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 40-104.
RX PubMed=16987950; DOI=10.1093/molbev/msl125;
RA Nardmann J., Werr W.;
RT "The shoot stem cell niche in angiosperms: expression patterns of WUS
RT orthologues in rice and maize imply major modifications in the course of
RT mono- and dicot evolution.";
RL Mol. Biol. Evol. 23:2492-2504(2006).
RN [6]
RP NOMENCLATURE.
RX PubMed=17351053; DOI=10.1104/pp.107.095737;
RA Dai M., Hu Y., Zhao Y., Liu H., Zhou D.-X.;
RT "A WUSCHEL-LIKE HOMEOBOX gene represses a YABBY gene expression required
RT for rice leaf development.";
RL Plant Physiol. 144:380-390(2007).
CC -!- FUNCTION: Transcription factor which may be involved in developmental
CC processes. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00108}.
CC -!- SIMILARITY: Belongs to the WUS homeobox family. {ECO:0000305}.
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DR EMBL; AP003241; BAB93218.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF06673.1; -; Genomic_DNA.
DR EMBL; AP014957; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AM234749; CAJ84141.1; -; mRNA.
DR RefSeq; XP_015644226.1; XM_015788740.1.
DR AlphaFoldDB; Q8LR86; -.
DR SMR; Q8LR86; -.
DR STRING; 4530.OS01T0840300-00; -.
DR PaxDb; Q8LR86; -.
DR PRIDE; Q8LR86; -.
DR GeneID; 4327390; -.
DR KEGG; osa:4327390; -.
DR eggNOG; ENOG502RZ2B; Eukaryota.
DR HOGENOM; CLU_191894_0_0_1; -.
DR InParanoid; Q8LR86; -.
DR OrthoDB; 1557524at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0099402; P:plant organ development; IEA:InterPro.
DR CDD; cd00086; homeodomain; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR044555; WUSCHEL-like.
DR PANTHER; PTHR45940; PTHR45940; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR SMART; SM00389; HOX; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
PE 2: Evidence at transcript level;
KW Developmental protein; DNA-binding; Homeobox; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..313
FT /note="WUSCHEL-related homeobox 5"
FT /id="PRO_0000308641"
FT DNA_BIND 40..104
FT /note="Homeobox; WUS-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT REGION 1..32
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 224..247
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 271..313
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 273..298
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 313 AA; 33206 MW; 3BD94F8D00CF9A83 CRC64;
METTTTTLGG GGGGRAGGFS DPPSPLSPPL SPASAAAAAL ANARWTPTKE QIAVLEGLYR
QGLRTPTAEQ IQQITARLRE HGHIEGKNVF YWFQNHKARQ RQKQKQQSFD YFSKLFRRPP
PLPVLHRPLA RPFPLAMAPT AMPPPPPPPA TTTTAACNAG GVMFRTPSFM PVATNNASYY
PQQQTPLLYP GMEVCPHDKS TAQPPATTTM YLQAPPSSAH LAAAAGRGAA EAEGHGRRGG
GAGGRETLQL FPLQPTFVLP DHKPLRAGSA CAAVSPTTPS ASASFSWESE SSDSPSSEAP
PFYDFFGVHS GGR
