WRK38_ARATH
ID WRK38_ARATH Reviewed; 289 AA.
AC Q8GWF1; Q9FK82;
DT 11-APR-2003, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2003, sequence version 1.
DT 03-AUG-2022, entry version 124.
DE RecName: Full=Probable WRKY transcription factor 38;
DE AltName: Full=WRKY DNA-binding protein 38;
GN Name=WRKY38; OrderedLocusNames=At5g22570; ORFNames=MQJ16.11;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9734815; DOI=10.1093/dnares/5.3.203;
RA Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence
RT features of the regions of 1,367,185 bp covered by 19 physically assigned
RT P1 and TAC clones.";
RL DNA Res. 5:203-216(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 3-289.
RC STRAIN=cv. Columbia; TISSUE=Flower;
RA Ulker B., Kushnir S., Somssich I.E.;
RT "Arabidopsis thaliana transcription factor WRKY38.";
RL Submitted (OCT-2001) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Transcription factor. Interacts specifically with the W box
CC (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-
CC acting element (By similarity). {ECO:0000250}.
CC -!- INTERACTION:
CC Q8GWF1; Q94JM3: ARF2; NbExp=3; IntAct=EBI-1993263, EBI-1799262;
CC Q8GWF1; Q8L9Y3: ARR14; NbExp=3; IntAct=EBI-1993263, EBI-1100737;
CC Q8GWF1; O22446: HDA19; NbExp=2; IntAct=EBI-1993263, EBI-593040;
CC Q8GWF1; Q9SAH7: WRKY40; NbExp=6; IntAct=EBI-1993263, EBI-1993363;
CC Q8GWF1; Q8H0Y8: WRKY41; NbExp=5; IntAct=EBI-1993263, EBI-15202502;
CC Q8GWF1; Q9C557: WRKY64; NbExp=3; IntAct=EBI-1993263, EBI-25513118;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the WRKY group III family. {ECO:0000305}.
CC -!- CAUTION: It is uncertain whether Met-1 or Met-3 is the initiator.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB09129.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; AB012244; BAB09129.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002688; AED93044.1; -; Genomic_DNA.
DR EMBL; AK118884; BAC43469.1; -; mRNA.
DR EMBL; BT005645; AAO64065.1; -; mRNA.
DR EMBL; AF442395; AAL35288.1; -; mRNA.
DR RefSeq; NP_197649.2; NM_122163.3.
DR AlphaFoldDB; Q8GWF1; -.
DR SMR; Q8GWF1; -.
DR BioGRID; 17595; 16.
DR IntAct; Q8GWF1; 17.
DR STRING; 3702.AT5G22570.1; -.
DR PaxDb; Q8GWF1; -.
DR PRIDE; Q8GWF1; -.
DR ProteomicsDB; 234288; -.
DR EnsemblPlants; AT5G22570.1; AT5G22570.1; AT5G22570.
DR GeneID; 832320; -.
DR Gramene; AT5G22570.1; AT5G22570.1; AT5G22570.
DR KEGG; ath:AT5G22570; -.
DR Araport; AT5G22570; -.
DR TAIR; locus:2171157; AT5G22570.
DR HOGENOM; CLU_066547_1_0_1; -.
DR InParanoid; Q8GWF1; -.
DR OMA; TINDAMY; -.
DR OrthoDB; 1070041at2759; -.
DR PhylomeDB; Q8GWF1; -.
DR PRO; PR:Q8GWF1; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q8GWF1; baseline and differential.
DR Genevisible; Q8GWF1; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IMP:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0042742; P:defense response to bacterium; IMP:TAIR.
DR GO; GO:0009863; P:salicylic acid mediated signaling pathway; IMP:TAIR.
DR Gene3D; 2.20.25.80; -; 1.
DR InterPro; IPR003657; WRKY_dom.
DR InterPro; IPR036576; WRKY_dom_sf.
DR InterPro; IPR044810; WRKY_plant.
DR PANTHER; PTHR31282; PTHR31282; 1.
DR Pfam; PF03106; WRKY; 1.
DR SMART; SM00774; WRKY; 1.
DR SUPFAM; SSF118290; SSF118290; 1.
DR PROSITE; PS50811; WRKY; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..289
FT /note="Probable WRKY transcription factor 38"
FT /id="PRO_0000133679"
FT DNA_BIND 104..172
FT /note="WRKY"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00223"
FT REGION 62..103
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 249..278
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 73..90
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 249..273
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 289 AA; 33268 MW; 2C9CFA6F3E0D7026 CRC64;
MEMNSPHEKA VQAIRYGHSC AMRLKRRLNH PMADGGPLSS YDLAKSIVES FSNAISILSA
KPETEDDQFS DLSSRDSSPP PQGSPSKKRK IDSTNSSENW RDDSPDPIYY DGYLWRKYGQ
KSIKKSNHQR SYYRCSYNKD HNCEARKHEQ KIKDNPPVYR TTYFGHHTCK TEHNLDAIFI
AGQDPLDDFK STQMIRFGKD QDQEKESRSN GFSLSVKHEE DIIKEQAIDQ YREITSNDQD
CQDVIEEYLS SPSGSYPPSS SSGSESADFN SDLLFDNPDS WDRYDQFYF
