WRK40_ARATH
ID WRK40_ARATH Reviewed; 302 AA.
AC Q9SAH7; B9DG71; B9DGG9; C0SV39; Q8L9J5;
DT 15-MAY-2002, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 136.
DE RecName: Full=Probable WRKY transcription factor 40 {ECO:0000303|Ref.1};
DE AltName: Full=WRKY DNA-binding protein 40 {ECO:0000303|Ref.1};
GN Name=WRKY40 {ECO:0000303|Ref.1};
GN OrderedLocusNames=At1g80840 {ECO:0000312|Araport:AT1G80840};
GN ORFNames=F23A5.19 {ECO:0000312|EMBL:AAF14671.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia; TISSUE=Aerial part;
RA Hikaru S., Somssich I.E.;
RT "Arabidopsis thaliana transcription factor WRKY40.";
RL Submitted (JAN-2002) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia; TISSUE=Rosette leaf;
RX PubMed=19423640; DOI=10.1093/dnares/dsp009;
RA Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M.,
RA Shinozaki K.;
RT "Analysis of multiple occurrences of alternative splicing events in
RT Arabidopsis thaliana using novel sequenced full-length cDNAs.";
RL DNA Res. 16:155-164(2009).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., Takiguchi Y.,
RA Takagi M.;
RT "ORF cloning and analysis of Arabidopsis transcription factor genes.";
RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Transcription factor (By similarity). Interacts specifically
CC with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-
CC responsive cis-acting element (By similarity).
CC {ECO:0000250|UniProtKB:Q9SUP6}.
CC -!- INTERACTION:
CC Q9SAH7; Q9C5T4: WRKY18; NbExp=7; IntAct=EBI-1993363, EBI-1993349;
CC Q9SAH7; Q8GWF1: WRKY38; NbExp=6; IntAct=EBI-1993363, EBI-1993263;
CC Q9SAH7; Q9SK33: WRKY60; NbExp=5; IntAct=EBI-1993363, EBI-2112777;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00223}.
CC -!- SIMILARITY: Belongs to the WRKY group III family. {ECO:0000305}.
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DR EMBL; AF480149; AAL85879.1; -; mRNA.
DR EMBL; AC011713; AAF14671.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE36457.1; -; Genomic_DNA.
DR EMBL; BT001914; AAN71913.1; -; mRNA.
DR EMBL; AK317045; BAH19738.1; -; mRNA.
DR EMBL; AK317150; BAH19836.1; -; mRNA.
DR EMBL; AB493542; BAH30380.1; -; mRNA.
DR EMBL; AY088395; AAM65933.1; -; mRNA.
DR PIR; A96841; A96841.
DR RefSeq; NP_178199.1; NM_106732.4.
DR AlphaFoldDB; Q9SAH7; -.
DR SMR; Q9SAH7; -.
DR BioGRID; 29641; 17.
DR IntAct; Q9SAH7; 8.
DR STRING; 3702.AT1G80840.1; -.
DR iPTMnet; Q9SAH7; -.
DR PaxDb; Q9SAH7; -.
DR PRIDE; Q9SAH7; -.
DR ProteomicsDB; 246416; -.
DR EnsemblPlants; AT1G80840.1; AT1G80840.1; AT1G80840.
DR GeneID; 844423; -.
DR Gramene; AT1G80840.1; AT1G80840.1; AT1G80840.
DR KEGG; ath:AT1G80840; -.
DR Araport; AT1G80840; -.
DR TAIR; locus:2025687; AT1G80840.
DR eggNOG; ENOG502QR7M; Eukaryota.
DR HOGENOM; CLU_047067_0_0_1; -.
DR InParanoid; Q9SAH7; -.
DR OMA; SPDQMEC; -.
DR OrthoDB; 1185192at2759; -.
DR PhylomeDB; Q9SAH7; -.
DR PRO; PR:Q9SAH7; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SAH7; baseline and differential.
DR Genevisible; Q9SAH7; AT.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IDA:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0042742; P:defense response to bacterium; IEP:TAIR.
DR GO; GO:0050832; P:defense response to fungus; IEP:TAIR.
DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IMP:CACAO.
DR GO; GO:0031347; P:regulation of defense response; IMP:TAIR.
DR GO; GO:0002237; P:response to molecule of bacterial origin; IMP:TAIR.
DR GO; GO:0009751; P:response to salicylic acid; IEP:TAIR.
DR GO; GO:0009611; P:response to wounding; IEP:TAIR.
DR Gene3D; 2.20.25.80; -; 1.
DR InterPro; IPR003657; WRKY_dom.
DR InterPro; IPR036576; WRKY_dom_sf.
DR InterPro; IPR044810; WRKY_plant.
DR PANTHER; PTHR31429; PTHR31429; 1.
DR Pfam; PF03106; WRKY; 1.
DR SMART; SM00774; WRKY; 1.
DR SUPFAM; SSF118290; SSF118290; 1.
DR PROSITE; PS50811; WRKY; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..302
FT /note="Probable WRKY transcription factor 40"
FT /id="PRO_0000133681"
FT DNA_BIND 140..206
FT /note="WRKY"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00223"
FT CONFLICT 4
FT /note="Y -> H (in Ref. 5; BAH19836)"
FT /evidence="ECO:0000305"
FT CONFLICT 137
FT /note="E -> V (in Ref. 5; BAH19738)"
FT /evidence="ECO:0000305"
FT CONFLICT 223
FT /note="G -> S (in Ref. 7; AAM65933)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 302 AA; 33696 MW; F8AFC891237CBA1D CRC64;
MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV
LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI GGVSESSSTD QDEYLCKKQR
EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK
KKVQRSVEDQ SVLVATYEGE HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP
VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
EK
