WRK41_ARATH
ID WRK41_ARATH Reviewed; 313 AA.
AC Q8H0Y8; O82511;
DT 11-APR-2003, integrated into UniProtKB/Swiss-Prot.
DT 11-APR-2003, sequence version 2.
DT 03-AUG-2022, entry version 131.
DE RecName: Full=Probable WRKY transcription factor 41;
DE AltName: Full=WRKY DNA-binding protein 41;
GN Name=WRKY41; OrderedLocusNames=At4g11070; ORFNames=F2P3.16, T22B4.50;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia; TISSUE=Flower;
RA Ulker B., Kushnir S., Somssich I.E.;
RT "Arabidopsis thaliana transcription factor WRKY41.";
RL Submitted (OCT-2001) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- FUNCTION: Transcription factor. Interacts specifically with the W box
CC (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-
CC acting element (By similarity). {ECO:0000250}.
CC -!- INTERACTION:
CC Q8H0Y8; Q8VYP6: At5g11010; NbExp=3; IntAct=EBI-15202502, EBI-21138980;
CC Q8H0Y8; Q9M1R4: IAA30; NbExp=3; IntAct=EBI-15202502, EBI-3946710;
CC Q8H0Y8; O23160: MYB73; NbExp=3; IntAct=EBI-15202502, EBI-25506855;
CC Q8H0Y8; Q9LQF0: TCP23; NbExp=3; IntAct=EBI-15202502, EBI-15192297;
CC Q8H0Y8; Q9LVG2: TOE2; NbExp=3; IntAct=EBI-15202502, EBI-4424568;
CC Q8H0Y8; Q8GWF1: WRKY38; NbExp=5; IntAct=EBI-15202502, EBI-1993263;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q8H0Y8-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q8H0Y8-2; Sequence=VSP_007128;
CC -!- SIMILARITY: Belongs to the WRKY group III family. {ECO:0000305}.
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DR EMBL; AF442396; AAL35289.1; -; mRNA.
DR EMBL; AF080120; AAC35548.1; -; Genomic_DNA.
DR EMBL; AL049876; CAB43042.1; -; Genomic_DNA.
DR EMBL; AL161518; CAB81208.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE82968.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE82969.1; -; Genomic_DNA.
DR EMBL; BT001107; AAN64171.1; -; mRNA.
DR EMBL; AY133686; AAM91620.1; -; mRNA.
DR PIR; T01927; T01927.
DR RefSeq; NP_192845.1; NM_117177.3. [Q8H0Y8-1]
DR RefSeq; NP_849358.1; NM_179027.1. [Q8H0Y8-2]
DR AlphaFoldDB; Q8H0Y8; -.
DR SMR; Q8H0Y8; -.
DR BioGRID; 12007; 10.
DR IntAct; Q8H0Y8; 10.
DR STRING; 3702.AT4G11070.1; -.
DR PaxDb; Q8H0Y8; -.
DR PRIDE; Q8H0Y8; -.
DR EnsemblPlants; AT4G11070.1; AT4G11070.1; AT4G11070. [Q8H0Y8-1]
DR EnsemblPlants; AT4G11070.2; AT4G11070.2; AT4G11070. [Q8H0Y8-2]
DR GeneID; 826708; -.
DR Gramene; AT4G11070.1; AT4G11070.1; AT4G11070. [Q8H0Y8-1]
DR Gramene; AT4G11070.2; AT4G11070.2; AT4G11070. [Q8H0Y8-2]
DR KEGG; ath:AT4G11070; -.
DR Araport; AT4G11070; -.
DR TAIR; locus:2136093; AT4G11070.
DR eggNOG; ENOG502QPRM; Eukaryota.
DR InParanoid; Q8H0Y8; -.
DR OMA; NQTYNCA; -.
DR OrthoDB; 1331082at2759; -.
DR PhylomeDB; Q8H0Y8; -.
DR PRO; PR:Q8H0Y8; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q8H0Y8; baseline and differential.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IBA:GO_Central.
DR Gene3D; 2.20.25.80; -; 1.
DR InterPro; IPR003657; WRKY_dom.
DR InterPro; IPR036576; WRKY_dom_sf.
DR InterPro; IPR044810; WRKY_plant.
DR PANTHER; PTHR32096; PTHR32096; 1.
DR Pfam; PF03106; WRKY; 1.
DR SMART; SM00774; WRKY; 1.
DR SUPFAM; SSF118290; SSF118290; 1.
DR PROSITE; PS50811; WRKY; 1.
PE 1: Evidence at protein level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..313
FT /note="Probable WRKY transcription factor 41"
FT /id="PRO_0000133682"
FT DNA_BIND 135..203
FT /note="WRKY"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00223"
FT VAR_SEQ 27..58
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:14593172"
FT /id="VSP_007128"
SQ SEQUENCE 313 AA; 34894 MW; 583459FCD9E0E8CE CRC64;
MEMMNWERRS LLNELIHGLK AAKQLQGSSS PSLSASSSYL TTEIKENLLH NIVSSFKKAI
LMLNGSTTQH NPTIELAPDP LAHPGKVPGS PASITGNPRS EEFFNVRSKE FNLSSKKRKM
LPKWTEQVRI SPERGLEGPH DDIFSWRKYG QKDILGAKFP RSYYRCTFRN TQYCWATKQV
QRSDGDPTIF EVTYRGTHTC SQGIPLPEKR ETKPKHTVAV NYQNLRASLT VRTGGLGSEA
FSFPVTSPLY TYESINGGGT FYHHVGSSGP SDFTGLISTN TSTGSSPIFD VNFQFDPTAE
INTGFPTFFH NSI
