WRK47_ARATH
ID WRK47_ARATH Reviewed; 489 AA.
AC Q9ZSI7; Q9M116;
DT 15-MAY-2002, integrated into UniProtKB/Swiss-Prot.
DT 15-MAY-2002, sequence version 2.
DT 03-AUG-2022, entry version 129.
DE RecName: Full=Probable WRKY transcription factor 47;
DE AltName: Full=WRKY DNA-binding protein 47;
GN Name=WRKY47; OrderedLocusNames=At4g01720; ORFNames=T15B16.12;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia; TISSUE=Flower;
RA Ulker B., Kushnir S., Somssich I.E.;
RT "Arabidopsis thaliana transcription factor WRKY47.";
RL Submitted (JAN-2002) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- FUNCTION: Transcription factor. Interacts specifically with the W box
CC (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-
CC acting element (By similarity). {ECO:0000250}.
CC -!- INTERACTION:
CC Q9ZSI7; Q9SZJ6: AGL21; NbExp=3; IntAct=EBI-2367993, EBI-621986;
CC Q9ZSI7; F4K1A8: At5g26749; NbExp=3; IntAct=EBI-2367993, EBI-15191587;
CC Q9ZSI7; Q9LXU1: PIM1; NbExp=4; IntAct=EBI-2367993, EBI-15193025;
CC Q9ZSI7; Q6X7J9: WOX4; NbExp=3; IntAct=EBI-2367993, EBI-4459694;
CC Q9ZSI7; Q9XEC3: WRKY42; NbExp=3; IntAct=EBI-2367993, EBI-15196907;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00223}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC72869.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AF480165; AAL85881.1; -; mRNA.
DR EMBL; AF104919; AAC72869.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AL161492; CAB77742.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE82069.1; -; Genomic_DNA.
DR EMBL; BT008704; AAP40510.1; -; mRNA.
DR PIR; B85022; B85022.
DR RefSeq; NP_192081.1; NM_116402.4.
DR AlphaFoldDB; Q9ZSI7; -.
DR SMR; Q9ZSI7; -.
DR BioGRID; 13292; 19.
DR IntAct; Q9ZSI7; 18.
DR STRING; 3702.AT4G01720.1; -.
DR PaxDb; Q9ZSI7; -.
DR PRIDE; Q9ZSI7; -.
DR ProteomicsDB; 246418; -.
DR EnsemblPlants; AT4G01720.1; AT4G01720.1; AT4G01720.
DR GeneID; 828001; -.
DR Gramene; AT4G01720.1; AT4G01720.1; AT4G01720.
DR KEGG; ath:AT4G01720; -.
DR Araport; AT4G01720; -.
DR TAIR; locus:2133432; AT4G01720.
DR eggNOG; ENOG502QSY8; Eukaryota.
DR HOGENOM; CLU_021824_3_2_1; -.
DR InParanoid; Q9ZSI7; -.
DR OMA; AMDPNFT; -.
DR OrthoDB; 1276816at2759; -.
DR PhylomeDB; Q9ZSI7; -.
DR PRO; PR:Q9ZSI7; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9ZSI7; baseline and differential.
DR Genevisible; Q9ZSI7; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR Gene3D; 2.20.25.80; -; 1.
DR InterPro; IPR003657; WRKY_dom.
DR InterPro; IPR036576; WRKY_dom_sf.
DR InterPro; IPR044810; WRKY_plant.
DR PANTHER; PTHR31429; PTHR31429; 1.
DR Pfam; PF03106; WRKY; 1.
DR SMART; SM00774; WRKY; 1.
DR SUPFAM; SSF118290; SSF118290; 1.
DR PROSITE; PS50811; WRKY; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..489
FT /note="Probable WRKY transcription factor 47"
FT /id="PRO_0000133688"
FT DNA_BIND 233..299
FT /note="WRKY"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00223"
FT REGION 15..43
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 143..222
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 449..489
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 165..222
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 489 AA; 53707 MW; 52732B99CA87BF51 CRC64;
MEEHIQDRRE IAFLHSGEFL HGDSDSKDHQ PNESPVERHH ESSIKEVDFF AAKSQPFDLG
HVRTTTIVGS SGFNDGLGLV NSCHGTSSND GDDKTKTQIS RLKLELERLH EENHKLKHLL
DEVSESYNDL QRRVLLARQT QVEGLHHKQH EDVPQAGSSQ ALENRRPKDM NHETPATTLK
RRSPDDVDGR DMHRGSPKTP RIDQNKSTNH EEQQNPHDQL PYRKARVSVR ARSDATTVND
GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC PVRKQVQRCA EDTTILTTTY EGNHNHPLPP
SATAMAATTS AAAAMLLSGS SSSNLHQTLS SPSATSSSSF YHNFPYTSTI ATLSASAPFP
TITLDLTNPP RPLQPPPQFL SQYGPAAFLP NANQIRSMNN NNQQLLIPNL FGPQAPPREM
VDSVRAAIAM DPNFTAALAA AISNIIGGGN NDNNNNTDIN DNKVDAKSGG SSNGDSPQLP
QSCTTFSTN
