WRK48_ARATH
ID WRK48_ARATH Reviewed; 399 AA.
AC Q9FGZ4;
DT 15-MAY-2002, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 125.
DE RecName: Full=Probable WRKY transcription factor 48;
DE AltName: Full=WRKY DNA-binding protein 48;
GN Name=WRKY48; OrderedLocusNames=At5g49520; ORFNames=K6M13.6;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia; TISSUE=Flower;
RA Ulker B., Kushnir S., Somssich I.E.;
RT "Arabidopsis thaliana transcription factor WRKY48.";
RL Submitted (OCT-2001) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10718197; DOI=10.1093/dnares/7.1.31;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:31-63(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- FUNCTION: Transcription factor. Interacts specifically with the W box
CC (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-
CC acting element (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00223}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AF442397; AAL35290.1; -; mRNA.
DR EMBL; AB023033; BAB10765.1; -; Genomic_DNA.
DR EMBL; CP002688; AED95824.1; -; Genomic_DNA.
DR EMBL; AY063870; AAL36226.1; -; mRNA.
DR EMBL; AY091224; AAM14163.1; -; mRNA.
DR RefSeq; NP_199763.1; NM_124329.3.
DR AlphaFoldDB; Q9FGZ4; -.
DR SMR; Q9FGZ4; -.
DR STRING; 3702.AT5G49520.1; -.
DR PaxDb; Q9FGZ4; -.
DR PRIDE; Q9FGZ4; -.
DR ProteomicsDB; 232455; -.
DR EnsemblPlants; AT5G49520.1; AT5G49520.1; AT5G49520.
DR GeneID; 835012; -.
DR Gramene; AT5G49520.1; AT5G49520.1; AT5G49520.
DR KEGG; ath:AT5G49520; -.
DR Araport; AT5G49520; -.
DR TAIR; locus:2157829; AT5G49520.
DR eggNOG; ENOG502QU0Y; Eukaryota.
DR HOGENOM; CLU_033779_1_0_1; -.
DR InParanoid; Q9FGZ4; -.
DR OMA; GQHSHPF; -.
DR OrthoDB; 882349at2759; -.
DR PRO; PR:Q9FGZ4; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FGZ4; baseline and differential.
DR Genevisible; Q9FGZ4; AT.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0003677; F:DNA binding; IDA:TAIR.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0042742; P:defense response to bacterium; IMP:TAIR.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:TAIR.
DR GO; GO:0009617; P:response to bacterium; IEP:TAIR.
DR Gene3D; 2.20.25.80; -; 1.
DR InterPro; IPR003657; WRKY_dom.
DR InterPro; IPR036576; WRKY_dom_sf.
DR InterPro; IPR044810; WRKY_plant.
DR PANTHER; PTHR31221; PTHR31221; 1.
DR Pfam; PF03106; WRKY; 1.
DR SMART; SM00774; WRKY; 1.
DR SUPFAM; SSF118290; SSF118290; 1.
DR PROSITE; PS50811; WRKY; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..399
FT /note="Probable WRKY transcription factor 48"
FT /id="PRO_0000133689"
FT DNA_BIND 215..280
FT /note="WRKY"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00223"
FT REGION 1..57
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 138..202
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 361..399
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..36
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 37..55
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 138..171
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 172..186
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 399 AA; 44726 MW; 5BE61498771516A4 CRC64;
MEKKKEEDHH HQQQQQQQKE IKNTETKIEQ EQEQEQKQEI SQASSSSNMA NLVTSSDHHP
LELAGNLSSI FDTSSLPFPY SYFEDHSSNN PNSFLDLLRQ DHQFASSSNS SSFSFDAFPL
PNNNNNTSFF TDLPLPQAES SEVVNTTPTS PNSTSVSSSS NEAANDNNSG KEVTVKDQEE
GDQQQEQKGT KPQLKAKKKN QKKAREARFA FLTKSDIDNL DDGYRWRKYG QKAVKNSPYP
RSYYRCTTVG CGVKKRVERS SDDPSIVMTT YEGQHTHPFP MTPRGHIGML TSPILDHGAT
TASSSSFSIP QPRYLLTQHH QPYNMYNNNS LSMINRRSSD GTFVNPGPSS SFPGFGYDMS
QASTSTSSSI RDHGLLQDIL PSQIRSDTIN TQTNEENKK
