WRK56_ARATH
ID WRK56_ARATH Reviewed; 195 AA.
AC Q8VWQ4; Q8L9F6; Q9SH51;
DT 11-APR-2003, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2002, sequence version 1.
DT 03-AUG-2022, entry version 118.
DE RecName: Full=Probable WRKY transcription factor 56;
DE AltName: Full=WRKY DNA-binding protein 56;
GN Name=WRKY56; OrderedLocusNames=At1g64000; ORFNames=F22C12.23;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia; TISSUE=Flower;
RA Ulker B., Kushnir S., Somssich I.E.;
RT "Arabidopsis thaliana transcription factor WRKY56.";
RL Submitted (DEC-2001) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Transcription factor. Interacts specifically with the W box
CC (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-
CC acting element (By similarity). {ECO:0000250}.
CC -!- INTERACTION:
CC Q8VWQ4; A0A178VL61: AXX17_At2g18500; NbExp=3; IntAct=EBI-25517688, EBI-25517681;
CC Q8VWQ4; Q9SZG3: VQ29; NbExp=3; IntAct=EBI-25517688, EBI-25517843;
CC Q8VWQ4; Q9FNP0: VQ31; NbExp=3; IntAct=EBI-25517688, EBI-25517821;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the WRKY group II-c family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF24572.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AY071848; AAL61858.1; -; mRNA.
DR EMBL; AC007764; AAF24572.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE34179.1; -; Genomic_DNA.
DR EMBL; AY088461; AAM65997.1; -; mRNA.
DR RefSeq; NP_176583.1; NM_105073.2.
DR AlphaFoldDB; Q8VWQ4; -.
DR SMR; Q8VWQ4; -.
DR BioGRID; 27924; 3.
DR IntAct; Q8VWQ4; 3.
DR STRING; 3702.AT1G64000.1; -.
DR PaxDb; Q8VWQ4; -.
DR PRIDE; Q8VWQ4; -.
DR ProteomicsDB; 234175; -.
DR EnsemblPlants; AT1G64000.1; AT1G64000.1; AT1G64000.
DR GeneID; 842703; -.
DR Gramene; AT1G64000.1; AT1G64000.1; AT1G64000.
DR KEGG; ath:AT1G64000; -.
DR Araport; AT1G64000; -.
DR TAIR; locus:2024583; AT1G64000.
DR eggNOG; ENOG502RXZS; Eukaryota.
DR HOGENOM; CLU_073202_4_0_1; -.
DR InParanoid; Q8VWQ4; -.
DR OMA; DDKTLMM; -.
DR OrthoDB; 1289791at2759; -.
DR PhylomeDB; Q8VWQ4; -.
DR PRO; PR:Q8VWQ4; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q8VWQ4; baseline and differential.
DR Genevisible; Q8VWQ4; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR Gene3D; 2.20.25.80; -; 1.
DR InterPro; IPR003657; WRKY_dom.
DR InterPro; IPR036576; WRKY_dom_sf.
DR InterPro; IPR044810; WRKY_plant.
DR PANTHER; PTHR31221; PTHR31221; 1.
DR Pfam; PF03106; WRKY; 1.
DR SMART; SM00774; WRKY; 1.
DR SUPFAM; SSF118290; SSF118290; 1.
DR PROSITE; PS50811; WRKY; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..195
FT /note="Probable WRKY transcription factor 56"
FT /id="PRO_0000133697"
FT DNA_BIND 108..173
FT /note="WRKY"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00223"
FT REGION 1..20
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 70..93
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 72
FT /note="G -> A (in Ref. 4; AAM65997)"
FT /evidence="ECO:0000305"
FT CONFLICT 97
FT /note="L -> S (in Ref. 4; AAM65997)"
FT /evidence="ECO:0000305"
FT CONFLICT 184
FT /note="R -> K (in Ref. 4; AAM65997)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 195 AA; 21774 MW; 7F5D89AA703CEE8C CRC64;
MEGVDNTNPM LTLEEGENNN PFSSLDDKTL MMMAPSLIFS GDVGPSSSSC TPAGYHLSAQ
LENFRGGGGE MGGLVSNNSN NSDHNKNCNK GKGKRTLAMQ RIAFHTRSDD DVLDDGYRWR
KYGQKSVKNN AHPRSYYRCT YHTCNVKKQV QRLAKDPNVV VTTYEGVHNH PCEKLMETLS
PLLRQLQFLS RVSDL
