WRK62_ARATH
ID WRK62_ARATH Reviewed; 263 AA.
AC Q9LZV6; Q9C5T2;
DT 11-APR-2003, integrated into UniProtKB/Swiss-Prot.
DT 11-APR-2003, sequence version 2.
DT 03-AUG-2022, entry version 130.
DE RecName: Full=Probable WRKY transcription factor 62;
DE AltName: Full=WRKY DNA-binding protein 62;
GN Name=WRKY62; OrderedLocusNames=At5g01900; ORFNames=T20L15.170;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND INDUCTION.
RX PubMed=11449049; DOI=10.2307/3871384;
RA Yu D., Chen C., Chen Z.;
RT "Evidence for an important role of WRKY DNA binding proteins in the
RT regulation of NPR1 gene expression.";
RL Plant Cell 13:1527-1540(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
CC -!- FUNCTION: Transcription factor. Interacts specifically with the W box
CC (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-
CC acting element (By similarity). {ECO:0000250}.
CC -!- INTERACTION:
CC Q9LZV6; O22446: HDA19; NbExp=5; IntAct=EBI-1993243, EBI-593040;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
CC -!- SIMILARITY: Belongs to the WRKY group III family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAK28310.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=CAB82760.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; AF224700; AAK28310.1; ALT_INIT; mRNA.
DR EMBL; AL162351; CAB82760.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002688; AED90407.1; -; Genomic_DNA.
DR PIR; T48211; T48211.
DR RefSeq; NP_195810.2; NM_120268.4.
DR AlphaFoldDB; Q9LZV6; -.
DR SMR; Q9LZV6; -.
DR BioGRID; 17102; 4.
DR IntAct; Q9LZV6; 1.
DR STRING; 3702.AT5G01900.1; -.
DR PaxDb; Q9LZV6; -.
DR PRIDE; Q9LZV6; -.
DR ProteomicsDB; 234176; -.
DR EnsemblPlants; AT5G01900.1; AT5G01900.1; AT5G01900.
DR GeneID; 831826; -.
DR Gramene; AT5G01900.1; AT5G01900.1; AT5G01900.
DR KEGG; ath:AT5G01900; -.
DR Araport; AT5G01900; -.
DR TAIR; locus:2181052; AT5G01900.
DR HOGENOM; CLU_066547_1_0_1; -.
DR InParanoid; Q9LZV6; -.
DR OMA; DYHRHES; -.
DR OrthoDB; 1125084at2759; -.
DR PhylomeDB; Q9LZV6; -.
DR PRO; PR:Q9LZV6; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LZV6; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0042742; P:defense response to bacterium; IMP:TAIR.
DR GO; GO:0009863; P:salicylic acid mediated signaling pathway; IMP:TAIR.
DR Gene3D; 2.20.25.80; -; 1.
DR InterPro; IPR003657; WRKY_dom.
DR InterPro; IPR036576; WRKY_dom_sf.
DR InterPro; IPR044810; WRKY_plant.
DR PANTHER; PTHR31282; PTHR31282; 1.
DR Pfam; PF03106; WRKY; 1.
DR SMART; SM00774; WRKY; 1.
DR SUPFAM; SSF118290; SSF118290; 1.
DR PROSITE; PS50811; WRKY; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..263
FT /note="Probable WRKY transcription factor 62"
FT /id="PRO_0000133703"
FT DNA_BIND 104..174
FT /note="WRKY"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00223"
FT REGION 59..104
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 59..78
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 89..104
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 164
FT /note="F -> L (in Ref. 1; AAK28310)"
FT /evidence="ECO:0000305"
FT CONFLICT 257
FT /note="T -> A (in Ref. 1; AAK28310)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 263 AA; 30443 MW; E8348EF30EE96995 CRC64;
MNSCQQKAME KLLHGHGCAN QLLIMDQTES DSSMEREDLA KSVLHCFSDA LSILIDTNDH
QDDQSNNSSP QDSSPVLESS RKPLHKRGRK TSMAESSDYH RHESSTPIYH DGFLWRKYGQ
KQIKESEYQR SYYKCAYTKD QNCEAKKQVQ KIQHNPPLYS TTYFGQHICQ LHQAYATFPI
DTSDFEEHEG SHMIRFGHPN ISFSSSTSNL RQHQNHQDRI KDEYMKPVIA EDWSPSQWMS
SEVALAVEAF EFNPFWTSHD LSS
