WTF1_ORYSJ
ID WTF1_ORYSJ Reviewed; 509 AA.
AC Q65XL5;
DT 25-OCT-2017, integrated into UniProtKB/Swiss-Prot.
DT 25-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 110.
DE RecName: Full=Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic {ECO:0000305};
DE Flags: Precursor;
GN OrderedLocusNames=Os05g0571100 {ECO:0000312|EMBL:BAF18285.1},
GN LOC_Os05g49610 {ECO:0000305};
GN ORFNames=OJ1735_C10.3 {ECO:0000312|EMBL:AAU44092.1},
GN OsJ_19611 {ECO:0000312|EMBL:EEE64755.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: RNA-binding protein involved in group II intron splicing.
CC Binds specific group II introns and promotes their splicing. Functions
CC in the context of a heterodimer with the ribonuclease III domain-
CC containing protein RNC1. {ECO:0000250|UniProtKB:B6TTV8}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000255}.
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DR EMBL; AC104284; AAU44092.1; -; Genomic_DNA.
DR EMBL; AP008211; BAF18285.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS95426.1; -; Genomic_DNA.
DR EMBL; CM000142; EEE64755.1; -; Genomic_DNA.
DR EMBL; AK068658; BAG91013.1; -; mRNA.
DR EMBL; AK104438; BAG96683.1; -; mRNA.
DR RefSeq; XP_015637556.1; XM_015782070.1.
DR AlphaFoldDB; Q65XL5; -.
DR STRING; 4530.OS05T0571100-01; -.
DR PaxDb; Q65XL5; -.
DR PRIDE; Q65XL5; -.
DR EnsemblPlants; Os05t0571100-01; Os05t0571100-01; Os05g0571100.
DR EnsemblPlants; Os05t0571100-02; Os05t0571100-02; Os05g0571100.
DR GeneID; 4339664; -.
DR Gramene; Os05t0571100-01; Os05t0571100-01; Os05g0571100.
DR Gramene; Os05t0571100-02; Os05t0571100-02; Os05g0571100.
DR KEGG; osa:4339664; -.
DR eggNOG; ENOG502QRW0; Eukaryota.
DR HOGENOM; CLU_024287_4_1_1; -.
DR InParanoid; Q65XL5; -.
DR OMA; SPYSDFT; -.
DR OrthoDB; 710613at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000007752; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0000373; P:Group II intron splicing; IEA:InterPro.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR InterPro; IPR021099; PORR_domain.
DR InterPro; IPR045040; PORR_fam.
DR InterPro; IPR040293; WTF1-like.
DR PANTHER; PTHR31476; PTHR31476; 1.
DR PANTHER; PTHR31476:SF4; PTHR31476:SF4; 1.
DR Pfam; PF11955; PORR; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; mRNA processing; mRNA splicing; Plastid; Reference proteome;
KW RNA-binding; Transit peptide.
FT TRANSIT 1..56
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 57..509
FT /note="Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic"
FT /id="PRO_0000441885"
FT DOMAIN 65..393
FT /note="PORR"
FT /evidence="ECO:0000255"
FT REGION 402..431
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 444..509
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 509 AA; 58169 MW; 7B47707D34E37C89 CRC64;
MDAKLLLLPF PSPPATLHHH PPPPKSLFLG ASLPLLHPPP PLRLLRPGAP RRLAVVAQAA
VKRRKEIPFD NVIQRDKKLK LVLKLRNILV SNPDRVMSLR DLGRFRRDLG LTRKRRLIAL
LKRFPGVFEV VEEGVYSLRF RLTPAAERLY LDELHLKNES EGLAVTKLRK LLMMSQDKRI
LIEKIAHLKN DLGLPPEFRD TICLRYPQYF RVVQMDRGPG LELTHWDPEL AVSAAEVAEE
ENRAREEQER NLIIDRPLKF NRVKLPQGLK LSRGEARRVA QFKEMPYISP YSDFSHLRSG
SAEKEKHACG VVHEILSLTL EKRTLVDHLT HFREEFRFSQ SLRGMLIRHP DMFYVSLKGD
RDSVFLREAY KNSQLVEKSK LVLLKEKMRA LVAVPRFPRR GVPATSEEAD RTNGAAQMLS
EGSDVEDDED EGLSDMEDLI SEISGGKSDT DYHWGDGWVG ENDDSPPDFE DDDGSSLKEV
KVTMKKTANS ANGKAHVPVF PDGRPRERW
