位置:首页 > 蛋白库 > WTF1_ORYSJ
WTF1_ORYSJ
ID   WTF1_ORYSJ              Reviewed;         509 AA.
AC   Q65XL5;
DT   25-OCT-2017, integrated into UniProtKB/Swiss-Prot.
DT   25-OCT-2004, sequence version 1.
DT   03-AUG-2022, entry version 110.
DE   RecName: Full=Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic {ECO:0000305};
DE   Flags: Precursor;
GN   OrderedLocusNames=Os05g0571100 {ECO:0000312|EMBL:BAF18285.1},
GN   LOC_Os05g49610 {ECO:0000305};
GN   ORFNames=OJ1735_C10.3 {ECO:0000312|EMBL:AAU44092.1},
GN   OsJ_19611 {ECO:0000312|EMBL:EEE64755.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA   Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA   Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA   Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT   "A fine physical map of the rice chromosome 5.";
RL   Mol. Genet. Genomics 274:337-345(2005).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
CC   -!- FUNCTION: RNA-binding protein involved in group II intron splicing.
CC       Binds specific group II introns and promotes their splicing. Functions
CC       in the context of a heterodimer with the ribonuclease III domain-
CC       containing protein RNC1. {ECO:0000250|UniProtKB:B6TTV8}.
CC   -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000255}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; AC104284; AAU44092.1; -; Genomic_DNA.
DR   EMBL; AP008211; BAF18285.1; -; Genomic_DNA.
DR   EMBL; AP014961; BAS95426.1; -; Genomic_DNA.
DR   EMBL; CM000142; EEE64755.1; -; Genomic_DNA.
DR   EMBL; AK068658; BAG91013.1; -; mRNA.
DR   EMBL; AK104438; BAG96683.1; -; mRNA.
DR   RefSeq; XP_015637556.1; XM_015782070.1.
DR   AlphaFoldDB; Q65XL5; -.
DR   STRING; 4530.OS05T0571100-01; -.
DR   PaxDb; Q65XL5; -.
DR   PRIDE; Q65XL5; -.
DR   EnsemblPlants; Os05t0571100-01; Os05t0571100-01; Os05g0571100.
DR   EnsemblPlants; Os05t0571100-02; Os05t0571100-02; Os05g0571100.
DR   GeneID; 4339664; -.
DR   Gramene; Os05t0571100-01; Os05t0571100-01; Os05g0571100.
DR   Gramene; Os05t0571100-02; Os05t0571100-02; Os05g0571100.
DR   KEGG; osa:4339664; -.
DR   eggNOG; ENOG502QRW0; Eukaryota.
DR   HOGENOM; CLU_024287_4_1_1; -.
DR   InParanoid; Q65XL5; -.
DR   OMA; SPYSDFT; -.
DR   OrthoDB; 710613at2759; -.
DR   Proteomes; UP000000763; Chromosome 5.
DR   Proteomes; UP000007752; Chromosome 5.
DR   Proteomes; UP000059680; Chromosome 5.
DR   GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0000373; P:Group II intron splicing; IEA:InterPro.
DR   GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR   InterPro; IPR021099; PORR_domain.
DR   InterPro; IPR045040; PORR_fam.
DR   InterPro; IPR040293; WTF1-like.
DR   PANTHER; PTHR31476; PTHR31476; 1.
DR   PANTHER; PTHR31476:SF4; PTHR31476:SF4; 1.
DR   Pfam; PF11955; PORR; 1.
PE   2: Evidence at transcript level;
KW   Chloroplast; mRNA processing; mRNA splicing; Plastid; Reference proteome;
KW   RNA-binding; Transit peptide.
FT   TRANSIT         1..56
FT                   /note="Chloroplast"
FT                   /evidence="ECO:0000255"
FT   CHAIN           57..509
FT                   /note="Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic"
FT                   /id="PRO_0000441885"
FT   DOMAIN          65..393
FT                   /note="PORR"
FT                   /evidence="ECO:0000255"
FT   REGION          402..431
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          444..509
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   509 AA;  58169 MW;  7B47707D34E37C89 CRC64;
     MDAKLLLLPF PSPPATLHHH PPPPKSLFLG ASLPLLHPPP PLRLLRPGAP RRLAVVAQAA
     VKRRKEIPFD NVIQRDKKLK LVLKLRNILV SNPDRVMSLR DLGRFRRDLG LTRKRRLIAL
     LKRFPGVFEV VEEGVYSLRF RLTPAAERLY LDELHLKNES EGLAVTKLRK LLMMSQDKRI
     LIEKIAHLKN DLGLPPEFRD TICLRYPQYF RVVQMDRGPG LELTHWDPEL AVSAAEVAEE
     ENRAREEQER NLIIDRPLKF NRVKLPQGLK LSRGEARRVA QFKEMPYISP YSDFSHLRSG
     SAEKEKHACG VVHEILSLTL EKRTLVDHLT HFREEFRFSQ SLRGMLIRHP DMFYVSLKGD
     RDSVFLREAY KNSQLVEKSK LVLLKEKMRA LVAVPRFPRR GVPATSEEAD RTNGAAQMLS
     EGSDVEDDED EGLSDMEDLI SEISGGKSDT DYHWGDGWVG ENDDSPPDFE DDDGSSLKEV
     KVTMKKTANS ANGKAHVPVF PDGRPRERW
 
 
维奥蛋白资源库 - 中文蛋白资源 CopyRight © 2010-2024