XAT3_ORYSJ
ID XAT3_ORYSJ Reviewed; 576 AA.
AC Q10I20; Q94LB9;
DT 05-DEC-2018, integrated into UniProtKB/Swiss-Prot.
DT 22-AUG-2006, sequence version 1.
DT 03-AUG-2022, entry version 108.
DE RecName: Full=Alpha-1,3-arabinosyltransferase XAT3 {ECO:0000305};
DE EC=2.4.2.- {ECO:0000269|PubMed:22215597};
DE AltName: Full=Xylan arabinosyltransferase 3 {ECO:0000303|PubMed:22215597};
DE Short=OsXAT3 {ECO:0000303|PubMed:22215597};
GN Name=XAT3 {ECO:0000303|PubMed:22215597};
GN OrderedLocusNames=Os03g0567600 {ECO:0000312|EMBL:BAF12422.1},
GN LOC_Os03g37010 {ECO:0000312|EMBL:ABF97170.1};
GN ORFNames=OsJ_11476 {ECO:0000312|EMBL:EAZ27523.1},
GN OSJNBa0026A15.4 {ECO:0000312|EMBL:AAK50581.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP FUNCTION, CATALYTIC ACTIVITY, AND SUBCELLULAR LOCATION.
RX PubMed=22215597; DOI=10.1073/pnas.1115858109;
RA Anders N., Wilkinson M.D., Lovegrove A., Freeman J., Tryfona T.,
RA Pellny T.K., Weimar T., Mortimer J.C., Stott K., Baker J.M.,
RA Defoin-Platel M., Shewry P.R., Dupree P., Mitchell R.A.;
RT "Glycosyl transferases in family 61 mediate arabinofuranosyl transfer onto
RT xylan in grasses.";
RL Proc. Natl. Acad. Sci. U.S.A. 109:989-993(2012).
CC -!- FUNCTION: Glycosyltransferase involved in the arabinosylation of xylan,
CC the major hemicellulose (non-cellulosic component) of primary and
CC secondary walls of angiosperms (PubMed:22215597). Possesses alpha-1,3-
CC arabinosyltransferase activity, transferring an arabinofuranose residue
CC to the xylan backbone (PubMed:22215597). {ECO:0000269|PubMed:22215597}.
CC -!- PATHWAY: Glycan metabolism. {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Golgi apparatus membrane
CC {ECO:0000305|PubMed:22215597}; Single-pass type II membrane protein
CC {ECO:0000255}.
CC -!- SIMILARITY: Belongs to the glycosyltransferase 61 family.
CC {ECO:0000305}.
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DR EMBL; AC084404; AAK50581.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF97170.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF12422.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS84963.1; -; Genomic_DNA.
DR EMBL; CM000140; EAZ27523.1; -; Genomic_DNA.
DR EMBL; AK098896; BAG93800.1; -; mRNA.
DR RefSeq; XP_015631462.1; XM_015775976.1.
DR AlphaFoldDB; Q10I20; -.
DR SMR; Q10I20; -.
DR STRING; 4530.OS03T0567600-01; -.
DR CAZy; GT61; Glycosyltransferase Family 61.
DR PaxDb; Q10I20; -.
DR PRIDE; Q10I20; -.
DR EnsemblPlants; Os03t0567600-01; Os03t0567600-01; Os03g0567600.
DR EnsemblPlants; Os03t0567600-02; Os03t0567600-02; Os03g0567600.
DR GeneID; 4333275; -.
DR Gramene; Os03t0567600-01; Os03t0567600-01; Os03g0567600.
DR Gramene; Os03t0567600-02; Os03t0567600-02; Os03g0567600.
DR eggNOG; KOG4698; Eukaryota.
DR HOGENOM; CLU_016869_3_1_1; -.
DR InParanoid; Q10I20; -.
DR OMA; HYKQYSI; -.
DR OrthoDB; 567582at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR ExpressionAtlas; Q10I20; baseline and differential.
DR GO; GO:0000139; C:Golgi membrane; IDA:UniProtKB.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0052636; F:arabinosyltransferase activity; IDA:UniProtKB.
DR GO; GO:0016757; F:glycosyltransferase activity; IBA:GO_Central.
DR GO; GO:0009664; P:plant-type cell wall organization; IMP:UniProtKB.
DR InterPro; IPR007657; Glycosyltransferase_61.
DR PANTHER; PTHR20961; PTHR20961; 1.
DR Pfam; PF04577; Glyco_transf_61; 1.
PE 1: Evidence at protein level;
KW Cell wall biogenesis/degradation; Glycoprotein; Glycosyltransferase;
KW Golgi apparatus; Membrane; Reference proteome; Signal-anchor; Transferase;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..576
FT /note="Alpha-1,3-arabinosyltransferase XAT3"
FT /id="PRO_0000445787"
FT TOPO_DOM 1..19
FT /note="Cytoplasmic"
FT /evidence="ECO:0000305"
FT TRANSMEM 20..40
FT /note="Helical; Signal-anchor for type II membrane protein"
FT /evidence="ECO:0000255"
FT TOPO_DOM 41..576
FT /note="Lumenal"
FT /evidence="ECO:0000305"
FT REGION 64..171
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 77..114
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 148..164
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CARBOHYD 172
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 375
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 443
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
SQ SEQUENCE 576 AA; 64743 MW; 3F9943BCECD7D014 CRC64;
MKAGERPKLV RGVRQESRRF RLLVIVVGFF LVSLTFVFVS KPDAILFSLN GKLPVEQAPT
SILIQQKVNE PSGESRKTST DALRGDPKVV DDEADAKPKG TGGGSEEEEG RVLSEPDPTS
GMMEPTHNKD GNGHKSHQET LGGGGDGESK GNDEEGEHAE QKHKVTLPTV SNYTIHDAAE
DTENAKQEGM NNVQQGSKPL CDFSNFRANV CEMRGDVRIH PTATSVLFME PEGSQRDEVW
KIKPYPRKGD EFCLSHITEV TVKSSKVAPE CTKYHDVPAV IFSLTGYTGN LFHDFTDVLV
PLFTTASEFN GEVQFLITDM ALWWTIKYQT VLQKLSKYPV IDFSKDDQVH CFKHAIVGLH
AYMEFTIDST KAPHNYSMAD FNRFMRGAYS LGRDSVTVLG EYPKIKPRLL IIKRHRTRMF
LNLDEIISMA EELGFEVVID EANVSSDISR FARLVNSVDV MMGVHGAGLT NCVFLPQHAT
LIQIVPWGGL DWISRTDFGN PAELMGLRYK QYSIGVDESS LTDQYPRDHE IFKNPISFHQ
RGFDFIRQTF MDKQNVKLDC KRFRPILLEA LDNLNP
