XB31_ORYSJ
ID XB31_ORYSJ Reviewed; 446 AA.
AC Q94CT7; A0A0P0VDK8;
DT 13-JUL-2010, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2001, sequence version 1.
DT 03-AUG-2022, entry version 136.
DE RecName: Full=Probable E3 ubiquitin-protein ligase XBOS31;
DE EC=2.3.2.27;
DE AltName: Full=Ankyrin repeat domain and RING finger-containing protein XBOS31;
DE AltName: Full=RING-type E3 ubiquitin transferase XBOS31;
DE AltName: Full=XB3 protein homolog 1;
GN Name=XBOS31; OrderedLocusNames=Os01g0974400, LOC_Os01g74320;
GN ORFNames=P0459B04.9;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine +
CC [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-
CC cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.;
CC EC=2.3.2.27;
CC -!- PATHWAY: Protein modification; protein ubiquitination.
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DR EMBL; AP003627; BAB63825.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF07468.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS76454.1; -; Genomic_DNA.
DR EMBL; AK106014; BAG97508.1; -; mRNA.
DR RefSeq; XP_015612477.1; XM_015756991.1.
DR AlphaFoldDB; Q94CT7; -.
DR SMR; Q94CT7; -.
DR STRING; 4530.OS01T0974400-01; -.
DR PaxDb; Q94CT7; -.
DR PRIDE; Q94CT7; -.
DR EnsemblPlants; Os01t0974400-01; Os01t0974400-01; Os01g0974400.
DR GeneID; 4324295; -.
DR Gramene; Os01t0974400-01; Os01t0974400-01; Os01g0974400.
DR KEGG; osa:4324295; -.
DR eggNOG; KOG4177; Eukaryota.
DR HOGENOM; CLU_049095_1_0_1; -.
DR InParanoid; Q94CT7; -.
DR OMA; IEIQKCG; -.
DR OrthoDB; 876605at2759; -.
DR UniPathway; UPA00143; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q94CT7; OS.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0044260; P:cellular macromolecule metabolic process; IEA:UniProt.
DR GO; GO:0016567; P:protein ubiquitination; IEA:UniProtKB-UniPathway.
DR Gene3D; 1.25.40.20; -; 2.
DR Gene3D; 3.30.40.10; -; 1.
DR InterPro; IPR002110; Ankyrin_rpt.
DR InterPro; IPR036770; Ankyrin_rpt-contain_sf.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR Pfam; PF00023; Ank; 1.
DR Pfam; PF12796; Ank_2; 1.
DR Pfam; PF13637; Ank_4; 1.
DR SMART; SM00248; ANK; 5.
DR SUPFAM; SSF48403; SSF48403; 1.
DR PROSITE; PS50297; ANK_REP_REGION; 1.
DR PROSITE; PS50088; ANK_REPEAT; 4.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 2: Evidence at transcript level;
KW ANK repeat; Metal-binding; Reference proteome; Repeat; Transferase;
KW Ubl conjugation pathway; Zinc; Zinc-finger.
FT CHAIN 1..446
FT /note="Probable E3 ubiquitin-protein ligase XBOS31"
FT /id="PRO_0000395745"
FT REPEAT 46..75
FT /note="ANK 1"
FT REPEAT 79..108
FT /note="ANK 2"
FT REPEAT 113..142
FT /note="ANK 3"
FT REPEAT 160..189
FT /note="ANK 4"
FT REPEAT 197..227
FT /note="ANK 5"
FT ZN_FING 317..366
FT /note="RING-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00175"
FT REGION 376..401
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 446 AA; 47701 MW; EDB6688BA44BAA3C CRC64;
MGHGLSCSRD TDEYDLFRAA QLGDIHALSA LLAADPALAR RATVYDRFTA LHIAAANGRL
QVLSMLLDRD GDVDVLSRKK QTPLMVAAMR GNTECVVRLL RGGANVLTFD SPRARTCLHH
AAYYGHAECL QAILGAAAQA QGPVAASWGF ARFVNVRDER GATPLHLAAR HARASCVRLL
LDKGAIVSAP TAVYGFPGST ALHLAARAGS MECIRELLAW GADRLQRDSA GRIAYAVAMR
RGHRACAALL NPAAAEPIVW PSPLKFIGEL EADAKALLEA ALMEANRERE KRILHGSDIN
IKGGDEEEES EDEEEACNIC FEQACSMEVK ECGHQMCAAC TLAICCHSKP NPKTLLLHPP
ACPFCRTTIS RLVVATTNSN KTNSRRRSRS RSSSFKGGLS SAMGSFSRIG RGSGRLVVDG
SSVGELADKP DHDFSSVAAA AAICDT
