XB34_ORYSJ
ID XB34_ORYSJ Reviewed; 513 AA.
AC Q7XI08; A0A0P0X5W8; Q7XI07;
DT 13-JUL-2010, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2003, sequence version 1.
DT 03-AUG-2022, entry version 128.
DE RecName: Full=Probable E3 ubiquitin-protein ligase XBOS34;
DE EC=2.3.2.27;
DE AltName: Full=Ankyrin repeat domain and RING finger-containing protein XBOS34;
DE AltName: Full=RING-type E3 ubiquitin transferase XBOS34;
DE AltName: Full=XB3 protein homolog 4;
GN Name=XBOS34; OrderedLocusNames=Os07g0446100, LOC_Os07g26490;
GN ORFNames=P0030H06.109-1, P0030H06.109-2;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine +
CC [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-
CC cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.;
CC EC=2.3.2.27;
CC -!- PATHWAY: Protein modification; protein ubiquitination.
CC -!- SEQUENCE CAUTION:
CC Sequence=AK100927; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=BAC79950.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP004395; BAC79949.1; -; Genomic_DNA.
DR EMBL; AP004395; BAC79950.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008213; BAF21449.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT01291.1; -; Genomic_DNA.
DR EMBL; AK100927; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015647431.1; XM_015791945.1.
DR AlphaFoldDB; Q7XI08; -.
DR SMR; Q7XI08; -.
DR STRING; 4530.OS07T0446100-01; -.
DR PaxDb; Q7XI08; -.
DR PRIDE; Q7XI08; -.
DR EnsemblPlants; Os07t0446100-01; Os07t0446100-01; Os07g0446100.
DR GeneID; 4343110; -.
DR Gramene; Os07t0446100-01; Os07t0446100-01; Os07g0446100.
DR KEGG; osa:4343110; -.
DR eggNOG; ENOG502QQ81; Eukaryota.
DR HOGENOM; CLU_027253_2_0_1; -.
DR InParanoid; Q7XI08; -.
DR OMA; SLFCGWM; -.
DR OrthoDB; 896321at2759; -.
DR UniPathway; UPA00143; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR ExpressionAtlas; Q7XI08; baseline and differential.
DR Genevisible; Q7XI08; OS.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0044260; P:cellular macromolecule metabolic process; IEA:UniProt.
DR GO; GO:0016567; P:protein ubiquitination; IEA:UniProtKB-UniPathway.
DR Gene3D; 1.25.40.20; -; 1.
DR Gene3D; 3.30.40.10; -; 1.
DR InterPro; IPR002110; Ankyrin_rpt.
DR InterPro; IPR036770; Ankyrin_rpt-contain_sf.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR Pfam; PF13857; Ank_5; 1.
DR SMART; SM00248; ANK; 3.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF48403; SSF48403; 1.
DR PROSITE; PS50297; ANK_REP_REGION; 1.
DR PROSITE; PS50088; ANK_REPEAT; 2.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 2: Evidence at transcript level;
KW ANK repeat; Metal-binding; Reference proteome; Repeat; Transferase;
KW Ubl conjugation pathway; Zinc; Zinc-finger.
FT CHAIN 1..513
FT /note="Probable E3 ubiquitin-protein ligase XBOS34"
FT /id="PRO_0000395748"
FT REPEAT 39..69
FT /note="ANK 1"
FT REPEAT 75..104
FT /note="ANK 2"
FT REPEAT 108..137
FT /note="ANK 3"
FT ZN_FING 462..501
FT /note="RING-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00175"
FT REGION 309..378
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 423..455
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 513 AA; 54729 MW; DC80CDED10D38017 CRC64;
MGLQQSKEEL VYQQVNYGNA DGIRALRAQG AGLEWIDKEG KTPLMVASMR PDLINVVQVL
IELGANVNAY RPGSYCGTAL HHAAKKGLEQ TVHLLLSHGA NPFITNDDCH TALDLAREKG
HVNVVRAIEG RISLFCGWMR ENYGPGFLEA FAPQFLTRKI WAVILPREAR NQTRPLKLEL
TIYPELQASK PQAVIKLWKC QLEEPKFNQA NPSVTIFDKG TRTRYKLLPV CEGDKQQLQW
FYSACCGIPQ VASMVPAQPA NAPLPNPSSA SSLPSVISTP SKEDAELAMA INASILSAIA
EGVPDVQPIT TTTATNDWGN PPSNSLNGWG PPDTSAPSKT SGQVPVVTSS SSTYNGWDVP
GTSSGQSSSK HNKSQNSTFV VPQEALPSLP VPTAPPLAVG TFYDGPIQYP SIDSTPVDVT
MPSADGGTAV SSAKPAENEG DAKPAESDAN ASNSGNTPPG TCVICLDAPV EGACIPCGHM
AGCMSCLKDI ESKKWGCPIC RAKINQIIRL YAV
