XCT_ORYSJ
ID XCT_ORYSJ Reviewed; 333 AA.
AC Q69JZ7; A0A0P0XQ56;
DT 03-NOV-2009, integrated into UniProtKB/Swiss-Prot.
DT 13-SEP-2004, sequence version 1.
DT 03-AUG-2022, entry version 90.
DE RecName: Full=Protein XAP5 CIRCADIAN TIMEKEEPER;
GN Name=XCT; OrderedLocusNames=Os09g0535300, LOC_Os09g36480;
GN ORFNames=J023088M16, OsJ_30139, P0569E11.5;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Involved in light regulation of the circadian clock and
CC photomorphogenesis. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the FAM50 family. {ECO:0000305}.
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DR EMBL; AP006067; BAD34215.1; -; Genomic_DNA.
DR EMBL; AP008215; BAF25694.1; -; Genomic_DNA.
DR EMBL; AP014965; BAT09143.1; -; Genomic_DNA.
DR EMBL; CM000146; EEE70122.1; -; Genomic_DNA.
DR EMBL; AK071211; BAG92374.1; -; mRNA.
DR RefSeq; XP_015651452.1; XM_015795966.1.
DR AlphaFoldDB; Q69JZ7; -.
DR STRING; 4530.OS09T0535300-01; -.
DR PaxDb; Q69JZ7; -.
DR PRIDE; Q69JZ7; -.
DR EnsemblPlants; Os09t0535300-01; Os09t0535300-01; Os09g0535300.
DR GeneID; 4347694; -.
DR Gramene; Os09t0535300-01; Os09t0535300-01; Os09g0535300.
DR KEGG; osa:4347694; -.
DR eggNOG; KOG2894; Eukaryota.
DR HOGENOM; CLU_037985_1_1_1; -.
DR InParanoid; Q69JZ7; -.
DR OMA; DFIWVFL; -.
DR OrthoDB; 1061864at2759; -.
DR Proteomes; UP000000763; Chromosome 9.
DR Proteomes; UP000007752; Chromosome 9.
DR Proteomes; UP000059680; Chromosome 9.
DR Genevisible; Q69JZ7; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0006325; P:chromatin organization; IBA:GO_Central.
DR GO; GO:0009873; P:ethylene-activated signaling pathway; IEA:EnsemblPlants.
DR GO; GO:0035196; P:miRNA processing; IEA:EnsemblPlants.
DR GO; GO:0042752; P:regulation of circadian rhythm; IEA:EnsemblPlants.
DR GO; GO:0010099; P:regulation of photomorphogenesis; IEA:EnsemblPlants.
DR GO; GO:0009637; P:response to blue light; IEA:EnsemblPlants.
DR GO; GO:0010114; P:response to red light; IEA:EnsemblPlants.
DR GO; GO:0048511; P:rhythmic process; IEA:UniProtKB-KW.
DR InterPro; IPR007005; XAP5.
DR PANTHER; PTHR12722; PTHR12722; 2.
DR Pfam; PF04921; XAP5; 1.
PE 2: Evidence at transcript level;
KW Biological rhythms; Coiled coil; Nucleus; Reference proteome.
FT CHAIN 1..333
FT /note="Protein XAP5 CIRCADIAN TIMEKEEPER"
FT /id="PRO_0000388467"
FT REGION 89..171
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 12..43
FT /evidence="ECO:0000255"
FT COILED 70..116
FT /evidence="ECO:0000255"
FT COMPBIAS 89..109
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 134..149
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 156..171
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 333 AA; 39264 MW; 6DE522F31AF39788 CRC64;
MSGFGDGYVG TAQDAVKIRR LEKQREAERR KIEELKNKSS DGQPGLLQFG SSTSEILETA
FKKETVGLVT REQYVEKRVN IRTKIEEEEK EKLQKLQQEE EELQMQKRKK RRVRGDPRLS
FCDEIENGSD EDEFENQEPQ KKHGPVKLGK DPTVETSFLP DREREAEEQA ERERLKKQWS
REQELIKNEP LTITYSYWDG TGHRRVIQVR KGDSIGEFLR AVQQQLAPEF REVRTTSVEN
LLYVKEDLII PHQHSFYELI INKARGKSGP LFHFDVHEDV RTIADATKEK DESHAGKVVE
RHWYEKNKHI FPASRWEIYD PTKKWERYTI HGD
