XEPA_BACSU
ID XEPA_BACSU Reviewed; 279 AA.
AC P39797;
DT 01-FEB-1995, integrated into UniProtKB/Swiss-Prot.
DT 16-JUN-2009, sequence version 3.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=Phage-like element PBSX protein XepA;
DE AltName: Full=Protein XkdY;
GN Name=xepA; Synonyms=xkdY; OrderedLocusNames=BSU12780;
OS Bacillus subtilis (strain 168).
OC Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX NCBI_TaxID=224308;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=168;
RX PubMed=7921239; DOI=10.1099/13500872-140-8-1855;
RA Longchamp P.F., Mauel C., Karamata D.;
RT "Lytic enzymes associated with defective prophages of Bacillus subtilis:
RT sequencing and characterization of the region comprising the N-
RT acetylmuramoyl-L-alanine amidase gene of prophage PBSX.";
RL Microbiology 140:1855-1867(1994).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=168 / SO113;
RX PubMed=8760915; DOI=10.1099/13500872-142-8-2031;
RA Krogh S., O'Reilly M., Nolan N., Devine K.M.;
RT "The phage-like element PBSX and part of the skin element, which are
RT resident at different locations on the Bacillus subtilis chromosome, are
RT highly homologous.";
RL Microbiology 142:2031-2040(1996).
RN [3]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=168;
RX PubMed=9555893; DOI=10.1128/jb.180.8.2110-2117.1998;
RA Krogh S., Jorgensen S.T., Devine K.M.;
RT "Lysis genes of the Bacillus subtilis defective prophage PBSX.";
RL J. Bacteriol. 180:2110-2117(1998).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=168;
RX PubMed=9384377; DOI=10.1038/36786;
RA Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V.,
RA Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R.,
RA Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S.,
RA Bruschi C.V., Caldwell B., Capuano V., Carter N.M., Choi S.-K.,
RA Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F.,
RA Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D.,
RA Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M.,
RA Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P.,
RA Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K.,
RA Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S.,
RA Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y.,
RA Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G.,
RA Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J.,
RA Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C.,
RA Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S.,
RA Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B.,
RA Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S.,
RA Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M.,
RA Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y.,
RA Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J.,
RA Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A.,
RA Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M.,
RA Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S.,
RA Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E.,
RA Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K.,
RA Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E.,
RA Yoshikawa H., Danchin A.;
RT "The complete genome sequence of the Gram-positive bacterium Bacillus
RT subtilis.";
RL Nature 390:249-256(1997).
RN [5]
RP SEQUENCE REVISION TO 17-18.
RX PubMed=19383706; DOI=10.1099/mic.0.027839-0;
RA Barbe V., Cruveiller S., Kunst F., Lenoble P., Meurice G., Sekowska A.,
RA Vallenet D., Wang T., Moszer I., Medigue C., Danchin A.;
RT "From a consortium sequence to a unified sequence: the Bacillus subtilis
RT 168 reference genome a decade later.";
RL Microbiology 155:1758-1775(2009).
CC -!- FUNCTION: Not known; does not seem to be involved in host cell lysis.
CC -!- SIMILARITY: To B.subtilis YqxG/YqdC. {ECO:0000305}.
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DR EMBL; L25924; AAA22642.1; -; Genomic_DNA.
DR EMBL; Z70177; CAA94046.1; -; Genomic_DNA.
DR EMBL; Z36941; CAA85400.1; -; Genomic_DNA.
DR EMBL; AL009126; CAB13135.2; -; Genomic_DNA.
DR PIR; H69733; H69733.
DR PIR; S65589; S65589.
DR RefSeq; NP_389161.2; NC_000964.3.
DR RefSeq; WP_003245597.1; NZ_JNCM01000035.1.
DR PDB; 6I56; X-ray; 2.12 A; A/B/C/D/E=1-279.
DR PDB; 6IA5; X-ray; 1.88 A; A/B/C/D/E=1-279.
DR PDBsum; 6I56; -.
DR PDBsum; 6IA5; -.
DR AlphaFoldDB; P39797; -.
DR SMR; P39797; -.
DR STRING; 224308.BSU12780; -.
DR PaxDb; P39797; -.
DR PRIDE; P39797; -.
DR EnsemblBacteria; CAB13135; CAB13135; BSU_12780.
DR GeneID; 938161; -.
DR KEGG; bsu:BSU12780; -.
DR PATRIC; fig|224308.179.peg.1386; -.
DR eggNOG; ENOG5030EJ0; Bacteria.
DR OMA; SEFVLYQ; -.
DR BioCyc; BSUB:BSU12780-MON; -.
DR Proteomes; UP000001570; Chromosome.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome.
FT CHAIN 1..279
FT /note="Phage-like element PBSX protein XepA"
FT /id="PRO_0000066005"
FT CONFLICT 17..18
FT /note="GA -> PP (in Ref. 2; CAA94046)"
FT /evidence="ECO:0000305"
FT STRAND 20..23
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 28..35
FT /evidence="ECO:0007829|PDB:6IA5"
FT HELIX 36..38
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 41..44
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 53..55
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 63..65
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 69..78
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 80..92
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 94..101
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 116..125
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 133..140
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 144..148
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 150..152
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 154..158
FT /evidence="ECO:0007829|PDB:6IA5"
FT HELIX 160..162
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 167..171
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 175..184
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 200..208
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 210..219
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 225..227
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 230..232
FT /evidence="ECO:0007829|PDB:6IA5"
FT TURN 233..235
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 238..243
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 246..252
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 257..269
FT /evidence="ECO:0007829|PDB:6IA5"
FT STRAND 271..278
FT /evidence="ECO:0007829|PDB:6IA5"
SQ SEQUENCE 279 AA; 30345 MW; A6807C6316C4B0F4 CRC64;
MVKYQYEFPL DKAGKAGAVK PYRGGKNDFV TPVSNLSGVA EILTNAALKA TEAYSQLGQD
RLGAVLISKV KGWAYADREG TLFIEESDNN NVWTTTAAVN VAAGVLTATD WVYLSKRYYR
FRYVNGNLQQ SEFVLYQSVG AGEMDVRVNE KTPLQIDFAE NQTHDGRLKV EARKTFDFVF
HENAESASEG AALPVDGAAH LLVEVYGTAE MSEVKFWGKS VSGQKLPIRG VKTDDATTAS
STLGKAEAWA FDIKGFKEII MEIISITGGT LSVKGTAVS
