XKDB_BACSU
ID XKDB_BACSU Reviewed; 278 AA.
AC P39781;
DT 01-FEB-1995, integrated into UniProtKB/Swiss-Prot.
DT 16-JUN-2009, sequence version 3.
DT 03-AUG-2022, entry version 110.
DE RecName: Full=Phage-like element PBSX protein XkdB;
GN Name=xkdB; Synonyms=ykxB; OrderedLocusNames=BSU12520;
OS Bacillus subtilis (strain 168).
OC Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX NCBI_TaxID=224308;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=168 / SO113;
RX PubMed=8083174; DOI=10.1128/jb.176.18.5820-5830.1994;
RA McDonnell G.E., Wood H., Devine K.M., McConnell D.J.;
RT "Genetic control of bacterial suicide: regulation of the induction of PBSX
RT in Bacillus subtilis.";
RL J. Bacteriol. 176:5820-5830(1994).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=168;
RA Krogh S., O'Reilly M., Nolan N., Devine K.M.;
RL Submitted (MAR-1996) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=168;
RX PubMed=9384377; DOI=10.1038/36786;
RA Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V.,
RA Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R.,
RA Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S.,
RA Bruschi C.V., Caldwell B., Capuano V., Carter N.M., Choi S.-K.,
RA Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F.,
RA Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D.,
RA Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M.,
RA Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P.,
RA Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K.,
RA Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S.,
RA Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y.,
RA Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G.,
RA Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J.,
RA Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C.,
RA Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S.,
RA Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B.,
RA Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S.,
RA Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M.,
RA Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y.,
RA Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J.,
RA Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A.,
RA Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M.,
RA Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S.,
RA Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E.,
RA Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K.,
RA Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E.,
RA Yoshikawa H., Danchin A.;
RT "The complete genome sequence of the Gram-positive bacterium Bacillus
RT subtilis.";
RL Nature 390:249-256(1997).
RN [4]
RP SEQUENCE REVISION TO 48 AND 209.
RX PubMed=19383706; DOI=10.1099/mic.0.027839-0;
RA Barbe V., Cruveiller S., Kunst F., Lenoble P., Meurice G., Sekowska A.,
RA Vallenet D., Wang T., Moszer I., Medigue C., Danchin A.;
RT "From a consortium sequence to a unified sequence: the Bacillus subtilis
RT 168 reference genome a decade later.";
RL Microbiology 155:1758-1775(2009).
CC -!- SIMILARITY: To B.subtilis YqaL. {ECO:0000305}.
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DR EMBL; Z34287; CAA84043.1; -; Genomic_DNA.
DR EMBL; Z70177; CAA94053.1; -; Genomic_DNA.
DR EMBL; AL009126; CAB13109.2; -; Genomic_DNA.
DR PIR; I40410; I40410.
DR RefSeq; NP_389134.2; NC_000964.3.
DR RefSeq; WP_003245799.1; NZ_JNCM01000035.1.
DR RefSeq; WP_009967049.1; NZ_CM000487.1.
DR AlphaFoldDB; P39781; -.
DR STRING; 224308.BSU12520; -.
DR PaxDb; P39781; -.
DR PRIDE; P39781; -.
DR EnsemblBacteria; CAB13109; CAB13109; BSU_12520.
DR GeneID; 939420; -.
DR KEGG; bsu:BSU12520; -.
DR PATRIC; fig|224308.179.peg.1354; -.
DR eggNOG; COG1522; Bacteria.
DR OMA; NSEHYDK; -.
DR BioCyc; BSUB:BSU12520-MON; -.
DR Proteomes; UP000001570; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR SUPFAM; SSF46785; SSF46785; 1.
PE 4: Predicted;
KW DNA-binding; Reference proteome.
FT CHAIN 1..278
FT /note="Phage-like element PBSX protein XkdB"
FT /id="PRO_0000066016"
FT DNA_BIND 58..80
FT /note="H-T-H motif"
FT /evidence="ECO:0000255"
FT REGION 117..136
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 239..278
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 239..261
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 263..278
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 48
FT /note="S -> R (in Ref. 2; CAA94053)"
FT /evidence="ECO:0000305"
FT CONFLICT 209
FT /note="Missing (in Ref. 1; CAA84043 and 2; CAA94053)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 278 AA; 32043 MW; ED2F0E892F6F99F0 CRC64;
MKNDKSYPFP TYSGLLNSEH YDKIGPALWL FLWFISSTTK EIEKDGVSWG IVLGHKPLKA
REMAAVFGVS EKTVRRWLEL LENHDYIKAV RAPYGLMISV KHSKKFSFRS DNTVHGSLKE
RPFSPQTPDT NDRTDIDKTN KYTAADDAVD HIAKRFTQLR SAQEGRTVYP SSRDYQAIAR
IVAIGVPVTQ TIKWLEECFQ AFENRRTAAS ETIKAFRYCS KFIEDRFFAQ QAKKNAAIQH
ERMKKHDKTN NRTDFGRAEK RETSITGGQT GRIRRKQV
