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XRCC5_MOUSE
ID   XRCC5_MOUSE             Reviewed;         732 AA.
AC   P27641; Q3TE46; Q3TJT0; Q3TN82; Q80UT1; Q8C4N6; Q8K1K7; Q9R169;
DT   01-AUG-1992, integrated into UniProtKB/Swiss-Prot.
DT   05-FEB-2008, sequence version 4.
DT   03-AUG-2022, entry version 192.
DE   RecName: Full=X-ray repair cross-complementing protein 5;
DE            EC=3.6.4.-;
DE   AltName: Full=ATP-dependent DNA helicase 2 subunit 2;
DE   AltName: Full=ATP-dependent DNA helicase II 80 kDa subunit;
DE   AltName: Full=CTC box-binding factor 85 kDa subunit;
DE            Short=CTC85;
DE            Short=CTCBF;
DE   AltName: Full=DNA repair protein XRCC5;
DE   AltName: Full=Ku autoantigen protein p86 homolog;
DE   AltName: Full=Ku80;
DE   AltName: Full=Nuclear factor IV;
GN   Name=Xrcc5; Synonyms=G22p2;
OS   Mus musculus (Mouse).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
OX   NCBI_TaxID=10090;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   STRAIN=BALB/cJ;
RX   PubMed=1641347; DOI=10.1093/nar/20.14.3784;
RA   Falzon M., Kuff E.L.;
RT   "The nucleotide sequence of a mouse cDNA encoding the 80 kDa subunit of the
RT   Ku (p70/p80) autoantigen.";
RL   Nucleic Acids Res. 20:3784-3784(1992).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   TISSUE=Mammary carcinoma;
RA   Jiang G.C., Yuan L.Z., Wei K.;
RT   "Ku gene mutation of radiosensitive mouse mammary carcinoma cell line SX-
RT   9.";
RL   Submitted (JUL-1999) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=C57BL/6J, and NOD;
RC   TISSUE=Embryonic head, Embryonic heart, Embryonic liver, Kidney, and
RC   Thymus;
RX   PubMed=16141072; DOI=10.1126/science.1112014;
RA   Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
RA   Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
RA   Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.,
RA   Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R.,
RA   Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T.,
RA   Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A.,
RA   Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B.,
RA   Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M.,
RA   Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S.,
RA   Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
RA   Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D.,
RA   Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M.,
RA   Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H.,
RA   Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V.,
RA   Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S.,
RA   Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H.,
RA   Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N.,
RA   Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F.,
RA   Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G.,
RA   Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z.,
RA   Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
RA   Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
RA   Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S.,
RA   Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K.,
RA   Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R.,
RA   van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H.,
RA   Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M.,
RA   Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C.,
RA   Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S.,
RA   Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K.,
RA   Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M.,
RA   Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C.,
RA   Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A.,
RA   Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.;
RT   "The transcriptional landscape of the mammalian genome.";
RL   Science 309:1559-1563(2005).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=129/Sv X 129SvCp, and FVB/N;
RC   TISSUE=Embryonic stem cell, and Mammary tumor;
RX   PubMed=15489334; DOI=10.1101/gr.2596504;
RG   The MGC Project Team;
RT   "The status, quality, and expansion of the NIH full-length cDNA project:
RT   the Mammalian Gene Collection (MGC).";
RL   Genome Res. 14:2121-2127(2004).
RN   [5]
RP   DEVELOPMENTAL STAGE, AND INDUCTION.
RX   PubMed=8605992; DOI=10.1016/0014-5793(96)00189-5;
RA   Oderwald H., Hughes M.J., Jost J.-P.;
RT   "Non-histone protein 1 (NHP1) is a member of the Ku protein family which is
RT   upregulated in differentiating mouse myoblasts and human promyelocytes.";
RL   FEBS Lett. 382:313-318(1996).
RN   [6]
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC   TISSUE=Kidney, Liver, Lung, Pancreas, Spleen, and Testis;
RX   PubMed=21183079; DOI=10.1016/j.cell.2010.12.001;
RA   Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R.,
RA   Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.;
RT   "A tissue-specific atlas of mouse protein phosphorylation and expression.";
RL   Cell 143:1174-1189(2010).
RN   [7]
RP   INTERACTION WITH CYREN.
RX   PubMed=30017584; DOI=10.1016/j.molcel.2018.06.018;
RA   Hung P.J., Johnson B., Chen B.R., Byrum A.K., Bredemeyer A.L.,
RA   Yewdell W.T., Johnson T.E., Lee B.J., Deivasigamani S., Hindi I.,
RA   Amatya P., Gross M.L., Paull T.T., Pisapia D.J., Chaudhuri J.,
RA   Petrini J.J.H., Mosammaparast N., Amarasinghe G.K., Zha S., Tyler J.K.,
RA   Sleckman B.P.;
RT   "MRI is a DNA damage response adaptor during classical non-homologous end
RT   joining.";
RL   Mol. Cell 71:332-342(2018).
CC   -!- FUNCTION: Single-stranded DNA-dependent ATP-dependent helicase that
CC       plays a key role in DNA non-homologous end joining (NHEJ) by recruiting
CC       DNA-PK to DNA. Required for double-strand break repair and V(D)J
CC       recombination. Also has a role in chromosome translocation. The DNA
CC       helicase II complex binds preferentially to fork-like ends of double-
CC       stranded DNA in a cell cycle-dependent manner. It works in the 3'-5'
CC       direction. During NHEJ, the XRCC5-XRRC6 dimer performs the recognition
CC       step: it recognizes and binds to the broken ends of the DNA and
CC       protects them from further resection. Binding to DNA may be mediated by
CC       XRCC6. The XRCC5-XRRC6 dimer acts as regulatory subunit of the DNA-
CC       dependent protein kinase complex DNA-PK by increasing the affinity of
CC       the catalytic subunit PRKDC to DNA by 100-fold. The XRCC5-XRRC6 dimer
CC       is probably involved in stabilizing broken DNA ends and bringing them
CC       together. The assembly of the DNA-PK complex to DNA ends is required
CC       for the NHEJ ligation step. The XRCC5-XRRC6 dimer probably also acts as
CC       a 5'-deoxyribose-5-phosphate lyase (5'-dRP lyase), by catalyzing the
CC       beta-elimination of the 5' deoxyribose-5-phosphate at an abasic site
CC       near double-strand breaks. XRCC5 probably acts as the catalytic subunit
CC       of 5'-dRP activity, and allows to 'clean' the termini of abasic sites,
CC       a class of nucleotide damage commonly associated with strand breaks,
CC       before such broken ends can be joined. The XRCC5-XRRC6 dimer together
CC       with APEX1 acts as a negative regulator of transcription. In
CC       association with NAA15, the XRCC5-XRRC6 dimer binds to the osteocalcin
CC       promoter and activates osteocalcin expression. As part of the DNA-PK
CC       complex, involved in the early steps of ribosome assembly by promoting
CC       the processing of precursor rRNA into mature 18S rRNA in the small-
CC       subunit processome. Binding to U3 small nucleolar RNA, recruits PRKDC
CC       and XRCC5/Ku86 to the small-subunit processome. Plays a role in the
CC       regulation of DNA virus-mediated innate immune response by assembling
CC       into the HDP-RNP complex, a complex that serves as a platform for IRF3
CC       phosphorylation and subsequent innate immune response activation
CC       through the cGAS-STING pathway. {ECO:0000250|UniProtKB:P13010}.
CC   -!- SUBUNIT: Heterodimer composed of XRCC5/Ku80 and XRCC6/Ku70 (By
CC       similarity). Component of the core long-range non-homologous end
CC       joining (NHEJ) complex (also named DNA-PK complex) composed of PRKDC,
CC       LIG4, XRCC4, XRCC6/Ku70, XRCC5/Ku86 and NHEJ1/XLF (By similarity).
CC       Additional component of the NHEJ complex includes PAXX (By similarity).
CC       Following autophosphorylation, PRKDC dissociates from DNA, leading to
CC       formation of the short-range NHEJ complex, composed of LIG4, XRCC4,
CC       XRCC6/Ku70, XRCC5/Ku86 and NHEJ1/XLF (By similarity). The XRCC5-XRCC6
CC       dimer also associates with NAA15, and this complex displays DNA binding
CC       activity towards the osteocalcin FGF response element (OCFRE) (By
CC       similarity). In addition, XRCC5 binds to the osteoblast-specific
CC       transcription factors MSX2 and RUNX2 (By similarity). Interacts with
CC       ELF3 (By similarity). Interacts with APLF (via KBM motif) (By
CC       similarity). The XRCC5/XRCC6 dimer associates in a DNA-dependent manner
CC       with APEX1 (By similarity). Identified in a complex with DEAF1 and
CC       XRCC6 (By similarity). Interacts with NR4A3; the DNA-dependent protein
CC       kinase complex DNA-PK phosphorylates and activates NR4A3 and prevents
CC       NR4A3 ubiquitinylation and degradation (By similarity). Interacts with
CC       RNF138 (By similarity). Interacts with CYREN (via KBM motif)
CC       (PubMed:30017584). Interacts with WRN (via KBM motif) (By similarity).
CC       Interacts (via N-terminus) with HSF1 (via N-terminus); this interaction
CC       is direct and prevents XRCC5/XRCC6 heterodimeric binding and non-
CC       homologous end joining (NHEJ) repair activities induced by ionizing
CC       radiation (IR) (By similarity). Interacts with DHX9; this interaction
CC       occurs in a RNA-dependent manner (By similarity). Part of the HDP-RNP
CC       complex composed of at least HEXIM1, PRKDC, XRCC5, XRCC6, paraspeckle
CC       proteins (SFPQ, NONO, PSPC1, RBM14, and MATR3) and NEAT1 RNA (By
CC       similarity). Interacts with ERCC6 (By similarity). Interacts with ATF7
CC       (By similarity). The XRCC5-XRCC6 dimer associates with ALKBH2.
CC       {ECO:0000250|UniProtKB:P13010, ECO:0000269|PubMed:30017584}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250|UniProtKB:P13010}. Nucleus,
CC       nucleolus {ECO:0000250|UniProtKB:P13010}. Chromosome
CC       {ECO:0000250|UniProtKB:P13010}.
CC   -!- DEVELOPMENTAL STAGE: Expression increases during promyelocyte
CC       differentiation. {ECO:0000269|PubMed:8605992}.
CC   -!- INDUCTION: Up-regulation during myogenesis is inhibited by cAMP, 3-
CC       aminobenzamide and sodium butyrate. Expression in myoblasts is
CC       unaffected by X-rays and UV light. {ECO:0000269|PubMed:8605992}.
CC   -!- DOMAIN: The EEXXXDDL motif is required for the interaction with
CC       catalytic subunit PRKDC and its recruitment to sites of DNA damage.
CC       {ECO:0000250|UniProtKB:P13010}.
CC   -!- PTM: ADP-ribosylated by PARP3. {ECO:0000250|UniProtKB:P13010}.
CC   -!- PTM: Phosphorylated on serine residues. Phosphorylation by PRKDC may
CC       enhance helicase activity. {ECO:0000250|UniProtKB:P13010}.
CC   -!- PTM: Sumoylated. {ECO:0000250|UniProtKB:P13010}.
CC   -!- PTM: Ubiquitinated by RNF8 via 'Lys-48'-linked ubiquitination following
CC       DNA damage, leading to its degradation and removal from DNA damage
CC       sites. Ubiquitinated by RNF138, leading to remove the Ku complex from
CC       DNA breaks. {ECO:0000250|UniProtKB:P13010}.
CC   -!- SIMILARITY: Belongs to the ku80 family. {ECO:0000305}.
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DR   EMBL; X66323; CAA46999.1; -; mRNA.
DR   EMBL; AF166486; AAD49720.1; -; mRNA.
DR   EMBL; AK081633; BAC38276.1; -; mRNA.
DR   EMBL; AK165470; BAE38207.1; -; mRNA.
DR   EMBL; AK167312; BAE39415.1; -; mRNA.
DR   EMBL; AK168913; BAE40726.1; -; mRNA.
DR   EMBL; AK169838; BAE41402.1; -; mRNA.
DR   EMBL; BC029218; AAH29218.1; -; mRNA.
DR   EMBL; BC051660; AAH51660.1; -; mRNA.
DR   CCDS; CCDS35608.1; -.
DR   PIR; S26303; S26303.
DR   RefSeq; NP_033559.2; NM_009533.2.
DR   AlphaFoldDB; P27641; -.
DR   SMR; P27641; -.
DR   BioGRID; 204608; 20.
DR   ComplexPortal; CPX-2047; Ku70:Ku80 complex.
DR   CORUM; P27641; -.
DR   IntAct; P27641; 6.
DR   MINT; P27641; -.
DR   STRING; 10090.ENSMUSP00000027379; -.
DR   iPTMnet; P27641; -.
DR   PhosphoSitePlus; P27641; -.
DR   EPD; P27641; -.
DR   jPOST; P27641; -.
DR   MaxQB; P27641; -.
DR   PaxDb; P27641; -.
DR   PeptideAtlas; P27641; -.
DR   PRIDE; P27641; -.
DR   ProteomicsDB; 275224; -.
DR   Antibodypedia; 3849; 1169 antibodies from 47 providers.
DR   DNASU; 22596; -.
DR   Ensembl; ENSMUST00000027379; ENSMUSP00000027379; ENSMUSG00000026187.
DR   GeneID; 22596; -.
DR   KEGG; mmu:22596; -.
DR   UCSC; uc007bkl.2; mouse.
DR   CTD; 7520; -.
DR   MGI; MGI:104517; Xrcc5.
DR   VEuPathDB; HostDB:ENSMUSG00000026187; -.
DR   eggNOG; KOG2326; Eukaryota.
DR   GeneTree; ENSGT00940000153239; -.
DR   HOGENOM; CLU_010975_2_1_1; -.
DR   InParanoid; P27641; -.
DR   OMA; WAMQYVW; -.
DR   OrthoDB; 598957at2759; -.
DR   PhylomeDB; P27641; -.
DR   TreeFam; TF101205; -.
DR   Reactome; R-MMU-5693571; Nonhomologous End-Joining (NHEJ).
DR   Reactome; R-MMU-6798695; Neutrophil degranulation.
DR   BioGRID-ORCS; 22596; 17 hits in 111 CRISPR screens.
DR   ChiTaRS; Xrcc5; mouse.
DR   PRO; PR:P27641; -.
DR   Proteomes; UP000000589; Chromosome 1.
DR   RNAct; P27641; protein.
DR   Bgee; ENSMUSG00000026187; Expressed in saccule of membranous labyrinth and 247 other tissues.
DR   Genevisible; P27641; MM.
DR   GO; GO:0000781; C:chromosome, telomeric region; ISO:MGI.
DR   GO; GO:0005737; C:cytoplasm; IDA:MGI.
DR   GO; GO:0070418; C:DNA-dependent protein kinase complex; ISO:MGI.
DR   GO; GO:0043564; C:Ku70:Ku80 complex; ISS:UniProtKB.
DR   GO; GO:0070419; C:nonhomologous end joining complex; ISS:UniProtKB.
DR   GO; GO:0005730; C:nucleolus; ISO:MGI.
DR   GO; GO:0005654; C:nucleoplasm; ISO:MGI.
DR   GO; GO:0005634; C:nucleus; IDA:MGI.
DR   GO; GO:0005886; C:plasma membrane; ISO:MGI.
DR   GO; GO:0032991; C:protein-containing complex; ISO:MGI.
DR   GO; GO:0032993; C:protein-DNA complex; ISO:MGI.
DR   GO; GO:1990904; C:ribonucleoprotein complex; ISS:UniProtKB.
DR   GO; GO:0090734; C:site of DNA damage; ISS:UniProtKB.
DR   GO; GO:0032040; C:small-subunit processome; ISS:UniProtKB.
DR   GO; GO:0051575; F:5'-deoxyribose-5-phosphate lyase activity; ISO:MGI.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0008094; F:ATP-dependent activity, acting on DNA; ISO:MGI.
DR   GO; GO:0003684; F:damaged DNA binding; IEA:InterPro.
DR   GO; GO:0045027; F:DNA end binding; ISO:MGI.
DR   GO; GO:0003678; F:DNA helicase activity; IEA:InterPro.
DR   GO; GO:0003690; F:double-stranded DNA binding; ISO:MGI.
DR   GO; GO:0003691; F:double-stranded telomeric DNA binding; ISO:MGI.
DR   GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR   GO; GO:0008022; F:protein C-terminus binding; ISO:MGI.
DR   GO; GO:0044877; F:protein-containing complex binding; ISO:MGI.
DR   GO; GO:0003723; F:RNA binding; ISS:UniProtKB.
DR   GO; GO:0042162; F:telomeric DNA binding; ISO:MGI.
DR   GO; GO:0000976; F:transcription cis-regulatory region binding; ISO:MGI.
DR   GO; GO:0034511; F:U3 snoRNA binding; ISS:UniProtKB.
DR   GO; GO:0031625; F:ubiquitin protein ligase binding; ISO:MGI.
DR   GO; GO:0002218; P:activation of innate immune response; ISO:MGI.
DR   GO; GO:0007420; P:brain development; IEA:Ensembl.
DR   GO; GO:0071475; P:cellular hyperosmotic salinity response; ISO:MGI.
DR   GO; GO:0006974; P:cellular response to DNA damage stimulus; ISS:UniProtKB.
DR   GO; GO:0071398; P:cellular response to fatty acid; IEA:Ensembl.
DR   GO; GO:0071480; P:cellular response to gamma radiation; ISS:UniProtKB.
DR   GO; GO:1990830; P:cellular response to leukemia inhibitory factor; IEP:MGI.
DR   GO; GO:0071481; P:cellular response to X-ray; ISO:MGI.
DR   GO; GO:0006302; P:double-strand break repair; IMP:MGI.
DR   GO; GO:0006303; P:double-strand break repair via nonhomologous end joining; ISS:UniProtKB.
DR   GO; GO:0060218; P:hematopoietic stem cell differentiation; IMP:MGI.
DR   GO; GO:0071425; P:hematopoietic stem cell proliferation; IMP:MGI.
DR   GO; GO:0045087; P:innate immune response; IEA:UniProtKB-KW.
DR   GO; GO:1904430; P:negative regulation of t-circle formation; ISO:MGI.
DR   GO; GO:0045892; P:negative regulation of transcription, DNA-templated; ISS:UniProtKB.
DR   GO; GO:0022008; P:neurogenesis; IMP:MGI.
DR   GO; GO:0050769; P:positive regulation of neurogenesis; IMP:MGI.
DR   GO; GO:0045860; P:positive regulation of protein kinase activity; ISO:MGI.
DR   GO; GO:0032212; P:positive regulation of telomere maintenance via telomerase; ISO:MGI.
DR   GO; GO:0000725; P:recombinational repair; IC:ComplexPortal.
DR   GO; GO:0048660; P:regulation of smooth muscle cell proliferation; ISS:UniProtKB.
DR   GO; GO:0009410; P:response to xenobiotic stimulus; IEA:Ensembl.
DR   GO; GO:0034462; P:small-subunit processome assembly; ISS:UniProtKB.
DR   GO; GO:0000723; P:telomere maintenance; IBA:GO_Central.
DR   CDD; cd00873; KU80; 1.
DR   Gene3D; 1.25.40.240; -; 1.
DR   Gene3D; 2.40.290.10; -; 1.
DR   Gene3D; 3.40.50.410; -; 1.
DR   InterPro; IPR006164; Ku70/Ku80_beta-barrel_dom.
DR   InterPro; IPR024193; Ku80.
DR   InterPro; IPR005160; Ku_C.
DR   InterPro; IPR036494; Ku_C_sf.
DR   InterPro; IPR005161; Ku_N.
DR   InterPro; IPR014893; Ku_PK_bind.
DR   InterPro; IPR016194; SPOC-like_C_dom_sf.
DR   InterPro; IPR036465; vWFA_dom_sf.
DR   Pfam; PF02735; Ku; 1.
DR   Pfam; PF03730; Ku_C; 1.
DR   Pfam; PF03731; Ku_N; 1.
DR   Pfam; PF08785; Ku_PK_bind; 1.
DR   PIRSF; PIRSF016570; Ku80; 1.
DR   SMART; SM00559; Ku78; 1.
DR   SUPFAM; SSF100939; SSF100939; 1.
DR   SUPFAM; SSF101420; SSF101420; 1.
DR   SUPFAM; SSF53300; SSF53300; 1.
PE   1: Evidence at protein level;
KW   Acetylation; Activator; ADP-ribosylation; ATP-binding; Chromosome;
KW   DNA damage; DNA recombination; DNA repair; DNA-binding; Helicase;
KW   Hydrolase; Immunity; Innate immunity; Isopeptide bond; Nucleotide-binding;
KW   Nucleus; Phosphoprotein; Reference proteome; Ribosome biogenesis;
KW   Transcription; Transcription regulation; Ubl conjugation.
FT   CHAIN           1..732
FT                   /note="X-ray repair cross-complementing protein 5"
FT                   /id="PRO_0000084341"
FT   DOMAIN          251..460
FT                   /note="Ku"
FT   REGION          138..165
FT                   /note="Leucine-zipper"
FT   REGION          708..732
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOTIF           720..728
FT                   /note="EEXXXDL motif"
FT   MOD_RES         258
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:P13010"
FT   MOD_RES         265
FT                   /note="N6-acetyllysine"
FT                   /evidence="ECO:0000250|UniProtKB:P13010"
FT   MOD_RES         318
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:P13010"
FT   MOD_RES         332
FT                   /note="N6-acetyllysine"
FT                   /evidence="ECO:0000250|UniProtKB:P13010"
FT   MOD_RES         535
FT                   /note="Phosphothreonine"
FT                   /evidence="ECO:0000250|UniProtKB:P13010"
FT   MOD_RES         578
FT                   /note="Phosphoserine; by PRKDC"
FT                   /evidence="ECO:0000250|UniProtKB:P13010"
FT   MOD_RES         580
FT                   /note="Phosphoserine; by PRKDC"
FT                   /evidence="ECO:0000250|UniProtKB:P13010"
FT   MOD_RES         581
FT                   /note="Phosphoserine; by PRKDC"
FT                   /evidence="ECO:0000250|UniProtKB:P13010"
FT   MOD_RES         666
FT                   /note="N6-acetyllysine"
FT                   /evidence="ECO:0000250|UniProtKB:P13010"
FT   MOD_RES         716
FT                   /note="Phosphothreonine; by PRKDC"
FT                   /evidence="ECO:0000250|UniProtKB:P13010"
FT   CROSSLNK        195
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0000250|UniProtKB:P13010"
FT   CROSSLNK        532
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0000250|UniProtKB:P13010"
FT   CROSSLNK        534
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0000250|UniProtKB:P13010"
FT   CROSSLNK        567
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0000250|UniProtKB:P13010"
FT   CROSSLNK        569
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0000250|UniProtKB:P13010"
FT   CROSSLNK        670
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0000250|UniProtKB:P13010"
FT   CROSSLNK        689
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0000250|UniProtKB:P13010"
FT   CONFLICT        5
FT                   /note="G -> V (in Ref. 1; CAA46999)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        24
FT                   /note="F -> I (in Ref. 1; CAA46999)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        57
FT                   /note="V -> A (in Ref. 1; CAA46999)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        66..69
FT                   /note="NALA -> MPLS (in Ref. 1; CAA46999)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        120
FT                   /note="R -> H (in Ref. 2; AAD49720)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        139
FT                   /note="S -> G (in Ref. 3; BAE38207)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        139
FT                   /note="S -> R (in Ref. 1; CAA46999)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        144
FT                   /note="Q -> K (in Ref. 1; CAA46999)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        157
FT                   /note="S -> C (in Ref. 1; CAA46999)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        226
FT                   /note="S -> F (in Ref. 2; AAD49720)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        409..410
FT                   /note="FP -> SL (in Ref. 1; CAA46999)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        414
FT                   /note="D -> G (in Ref. 3; BAC38276)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        415
FT                   /note="A -> T (in Ref. 2; AAD49720)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        418
FT                   /note="C -> R (in Ref. 1; CAA46999)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        442
FT                   /note="K -> M (in Ref. 2; AAD49720)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        479
FT                   /note="T -> A (in Ref. 1; CAA46999)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        515..516
FT                   /note="ML -> IW (in Ref. 1; CAA46999)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        524
FT                   /note="A -> Q (in Ref. 1; CAA46999)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        530..531
FT                   /note="LS -> PL (in Ref. 1; CAA46999)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        558
FT                   /note="N -> H (in Ref. 2; AAD49720)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        692
FT                   /note="G -> A (in Ref. 1; CAA46999)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        703
FT                   /note="T -> K (in Ref. 1; CAA46999)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        708
FT                   /note="P -> H (in Ref. 3; BAE39415)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   732 AA;  83057 MW;  391F0FAF7EB04288 CRC64;
     MAWSGNKAAV VLCVDVGVAM GNSFPGEESP IEQAKKVMTM FVQRQVFSES KDEIALVLYG
     TDGTDNALAG KDQYQNITVC RHLMLPDFDL LEDIGNKIQP SSQQADFLDA LIVCMDLIQR
     ETIGKKFGKK HIEVFTDLSS PFSQDQLDVI ICNLKKSGIS LQFFLPFPID KNGEPGERGD
     LDSGLDHLKP SFPQKGLTEQ QKEGIRMVTR VMLSLEGEDG LDEIYSFSES LRQLCVFKKI
     ERRSMPWPCQ LTIGPNLSIK IVAYKSIVQE KFKKSWVVVD ARTLKKEDIQ KETVYCLNDD
     DETEVSKEDT IQGYRYGSDI IPFSKVDEEQ MKYKSEGKCF SVLGFCKSSQ VHRRFFMGHQ
     VLKVFAAKDD EAAAVALSSL VHALDELNMV AIVRYAYDKR SNPQVGVAFP YIKDAYECLV
     YVQLPFMEDL RQYMFSSLKN NKKCTPTEAQ LSAIDDLIDS MSLVKKNEEE DIVEDLFPTS
     KIPNPEFQRL YQCLLHRALH LQERLPPIQQ HILNMLDPPT EMKAKCESPL SKVKTLFPLT
     EVIKKKNQVT AQDVFQDNHE EGPAAKKYKT EKEEDHISIS SLAEGNITKV GSVNPVENFR
     FLVRQKIASF EEASLQLISH IEQFLDTNET LYFMKSMDCI KAFREEAIQF SEEQRFNSFL
     EALREKVEIK QLNHFWEIVV QDGVTLITKD EGPGSSITAE EATKFLAPKD KAKEDTTGPE
     EAGDVDDLLD MI
 
 
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