Y1056_ARATH
ID Y1056_ARATH Reviewed; 172 AA.
AC F4I8U3;
DT 21-SEP-2011, integrated into UniProtKB/Swiss-Prot.
DT 28-JUN-2011, sequence version 1.
DT 03-AUG-2022, entry version 49.
DE RecName: Full=Putative B3 domain-containing protein At1g05615;
GN OrderedLocusNames=At1g05615; ORFNames=F3F20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006;
RA Swaminathan K., Peterson K., Jack T.;
RT "The plant B3 superfamily.";
RL Trends Plant Sci. 13:647-655(2008).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
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DR EMBL; AC007153; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002684; AEE27865.1; -; Genomic_DNA.
DR RefSeq; NP_683278.1; NM_148437.1.
DR AlphaFoldDB; F4I8U3; -.
DR STRING; 3702.AT1G05615.1; -.
DR PaxDb; F4I8U3; -.
DR PRIDE; F4I8U3; -.
DR EnsemblPlants; AT1G05615.1; AT1G05615.1; AT1G05615.
DR GeneID; 837067; -.
DR Gramene; AT1G05615.1; AT1G05615.1; AT1G05615.
DR KEGG; ath:AT1G05615; -.
DR Araport; AT1G05615; -.
DR TAIR; locus:504956227; AT1G05615.
DR HOGENOM; CLU_1557391_0_0_1; -.
DR InParanoid; F4I8U3; -.
DR OMA; CGDETEC; -.
DR OrthoDB; 1592184at2759; -.
DR PhylomeDB; F4I8U3; -.
DR PRO; PR:F4I8U3; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; F4I8U3; baseline.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR005508; At2g31720-like.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR PANTHER; PTHR31541; PTHR31541; 1.
DR Pfam; PF03754; DUF313; 1.
PE 3: Inferred from homology;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..172
FT /note="Putative B3 domain-containing protein At1g05615"
FT /id="PRO_0000412844"
FT DNA_BIND 69..169
FT /note="TF-B3"
SQ SEQUENCE 172 AA; 19775 MW; 4ADD1156C23F0E4C CRC64;
MGAIHDEPFT ACGDETECFG GNREGSQSFH SSSTKEENLE DSYLYLVHQR SMSIFFWDER
ANTGVAGAVD EGKIIDFEFL NPDEKRIIEE HANKEREEGV DVILVNFDRR EYMLNLRRWN
MGTSPLYILV SGRYNVVKGC RLKEGNEIRI WSFHFDDQLN LAMVPLTPTE SG