Y1098_ALTMD
ID Y1098_ALTMD Reviewed; 109 AA.
AC B4RU48; F2G8T0;
DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot.
DT 23-SEP-2008, sequence version 1.
DT 25-MAY-2022, entry version 77.
DE RecName: Full=Nucleoid-associated protein MADE_1013280 {ECO:0000255|HAMAP-Rule:MF_00274};
GN OrderedLocusNames=MADE_1013280;
OS Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep
OS ecotype).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC Alteromonadaceae; Alteromonas/Salinimonas group; Alteromonas.
OX NCBI_TaxID=1774373;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype;
RX PubMed=18670397; DOI=10.1038/ismej.2008.74;
RA Ivars-Martinez E., Martin-Cuadrado A.-B., D'Auria G., Mira A., Ferriera S.,
RA Johnson J., Friedman R., Rodriguez-Valera F.;
RT "Comparative genomics of two ecotypes of the marine planktonic copiotroph
RT Alteromonas macleodii suggests alternative lifestyles associated with
RT different kinds of particulate organic matter.";
RL ISME J. 2:1194-1212(2008).
CC -!- FUNCTION: Binds to DNA and alters its conformation. May be involved in
CC regulation of gene expression, nucleoid organization and DNA
CC protection. {ECO:0000255|HAMAP-Rule:MF_00274}.
CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00274}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm, nucleoid {ECO:0000255|HAMAP-
CC Rule:MF_00274}.
CC -!- SIMILARITY: Belongs to the YbaB/EbfC family. {ECO:0000255|HAMAP-
CC Rule:MF_00274}.
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DR EMBL; CP001103; AEA98790.1; -; Genomic_DNA.
DR RefSeq; WP_012519082.1; NC_011138.3.
DR AlphaFoldDB; B4RU48; -.
DR SMR; B4RU48; -.
DR EnsemblBacteria; AEA98790; AEA98790; MADE_1013280.
DR KEGG; amc:MADE_1013280; -.
DR HOGENOM; CLU_140930_0_0_6; -.
DR OMA; MGNMMKQ; -.
DR Proteomes; UP000001870; Chromosome.
DR GO; GO:0043590; C:bacterial nucleoid; IEA:UniProtKB-UniRule.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-UniRule.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR Gene3D; 3.30.1310.10; -; 1.
DR HAMAP; MF_00274; DNA_YbaB_EbfC; 1.
DR InterPro; IPR036894; YbaB-like_sf.
DR InterPro; IPR004401; YbaB/EbfC.
DR PANTHER; PTHR33449; PTHR33449; 1.
DR Pfam; PF02575; YbaB_DNA_bd; 1.
DR PIRSF; PIRSF004555; UCP004555; 1.
DR SUPFAM; SSF82607; SSF82607; 1.
DR TIGRFAMs; TIGR00103; DNA_YbaB_EbfC; 1.
PE 3: Inferred from homology;
KW Cytoplasm; DNA-binding.
FT CHAIN 1..109
FT /note="Nucleoid-associated protein MADE_1013280"
FT /id="PRO_1000114580"
FT REGION 86..109
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 109 AA; 12011 MW; 79490022134A80FE CRC64;
MFKGGMGNIM KQAQQMQERM QKVQDDLANL EVTGEAGAGM VKVTMTCNHN VRRVNIDESL
MDDDKDMVED LVAAAFNDAV RRVQETSKEK MGDVTGGMPL PPGFKMPGF