Y1157_DECAR
ID Y1157_DECAR Reviewed; 357 AA.
AC Q47GW8;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 13-SEP-2005, sequence version 1.
DT 03-AUG-2022, entry version 89.
DE RecName: Full=Probable RNA methyltransferase Daro_1157;
DE EC=2.1.1.-;
GN OrderedLocusNames=Daro_1157;
OS Dechloromonas aromatica (strain RCB).
OC Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Azonexaceae;
OC Dechloromonas.
OX NCBI_TaxID=159087;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=RCB;
RX PubMed=19650930; DOI=10.1186/1471-2164-10-351;
RA Salinero K.K., Keller K., Feil W.S., Feil H., Trong S., Di Bartolo G.,
RA Lapidus A.;
RT "Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB:
RT indications of a surprisingly complex life-style and cryptic anaerobic
RT pathways for aromatic degradation.";
RL BMC Genomics 10:351-351(2009).
CC -!- COFACTOR:
CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; Evidence={ECO:0000250};
CC Note=Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3
CC cysteines and an exchangeable S-adenosyl-L-methionine. {ECO:0000250};
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the radical SAM superfamily. RlmN family.
CC {ECO:0000305}.
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DR EMBL; CP000089; AAZ45913.1; -; Genomic_DNA.
DR RefSeq; WP_011286922.1; NC_007298.1.
DR AlphaFoldDB; Q47GW8; -.
DR SMR; Q47GW8; -.
DR STRING; 159087.Daro_1157; -.
DR EnsemblBacteria; AAZ45913; AAZ45913; Daro_1157.
DR KEGG; dar:Daro_1157; -.
DR eggNOG; COG0820; Bacteria.
DR HOGENOM; CLU_029101_3_3_4; -.
DR OMA; KVVFMGM; -.
DR OrthoDB; 1111428at2; -.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0008173; F:RNA methyltransferase activity; IEA:InterPro.
DR GO; GO:0006364; P:rRNA processing; IEA:InterPro.
DR Gene3D; 3.20.20.70; -; 1.
DR InterPro; IPR013785; Aldolase_TIM.
DR InterPro; IPR040072; Methyltransferase_A.
DR InterPro; IPR004383; rRNA_lsu_MTrfase_RlmN/Cfr.
DR InterPro; IPR007197; rSAM.
DR PANTHER; PTHR30544; PTHR30544; 1.
DR Pfam; PF04055; Radical_SAM; 1.
DR PIRSF; PIRSF006004; CHP00048; 1.
DR SFLD; SFLDF00275; adenosine_C2_methyltransferase; 1.
DR SFLD; SFLDS00029; Radical_SAM; 1.
DR PROSITE; PS51918; RADICAL_SAM; 1.
PE 3: Inferred from homology;
KW 4Fe-4S; Cytoplasm; Disulfide bond; Iron; Iron-sulfur; Metal-binding;
KW Methyltransferase; S-adenosyl-L-methionine; Transferase.
FT CHAIN 1..357
FT /note="Probable RNA methyltransferase Daro_1157"
FT /id="PRO_0000350144"
FT DOMAIN 94..320
FT /note="Radical SAM core"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01266"
FT ACT_SITE 91
FT /note="Proton acceptor"
FT /evidence="ECO:0000255"
FT ACT_SITE 325
FT /note="S-methylcysteine intermediate"
FT /evidence="ECO:0000250"
FT BINDING 108
FT /ligand="[4Fe-4S] cluster"
FT /ligand_id="ChEBI:CHEBI:49883"
FT /ligand_note="4Fe-4S-S-AdoMet"
FT /evidence="ECO:0000250"
FT BINDING 112
FT /ligand="[4Fe-4S] cluster"
FT /ligand_id="ChEBI:CHEBI:49883"
FT /ligand_note="4Fe-4S-S-AdoMet"
FT /evidence="ECO:0000250"
FT BINDING 115
FT /ligand="[4Fe-4S] cluster"
FT /ligand_id="ChEBI:CHEBI:49883"
FT /ligand_note="4Fe-4S-S-AdoMet"
FT /evidence="ECO:0000250"
FT BINDING 153..154
FT /ligand="S-adenosyl-L-methionine"
FT /ligand_id="ChEBI:CHEBI:59789"
FT /evidence="ECO:0000250"
FT BINDING 183
FT /ligand="S-adenosyl-L-methionine"
FT /ligand_id="ChEBI:CHEBI:59789"
FT /evidence="ECO:0000250"
FT BINDING 206..208
FT /ligand="S-adenosyl-L-methionine"
FT /ligand_id="ChEBI:CHEBI:59789"
FT /evidence="ECO:0000250"
FT BINDING 282
FT /ligand="S-adenosyl-L-methionine"
FT /ligand_id="ChEBI:CHEBI:59789"
FT /evidence="ECO:0000250"
FT DISULFID 101..325
FT /note="(transient)"
FT /evidence="ECO:0000250"
SQ SEQUENCE 357 AA; 39194 MW; 45016EE82479955D CRC64;
MRLETIRQSM RATGAKDCHI DRVLRAWTQA KPLESGARRH QPENFLPQAL RTALPALQEE
LSALARVRSE HPGEDGSSRL LVELADGQTV ESVLLPRDGL CISTQIGCAV GCTFCMTGRD
GLLRQVSSAE MVAQVVLGRG RRKVTRVVFM GMGEPSHNMD NVLEAIDTLG TYGGIGHKNL
VFSTVGDRRV FDRLPQQRVV PALALSLHST RAELRAELLP KAPHIDPTEL VELAEHYART
TGYPIQYQWT LIDGINDSIE EMDGIVRLLT GKYAIMNLIP YNATATLDYR RPSLEHITTL
TKYLHAKGIR TTVRNSAGQD VDGGCGQLRA RTLDAGTATD AQKISLKHLK TGTRSAA