Y1176_ORYSJ
ID Y1176_ORYSJ Reviewed; 406 AA.
AC Q2R9D2; A0A0P0XZV8; Q53LR2;
DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot.
DT 11-JUL-2006, sequence version 1.
DT 25-MAY-2022, entry version 90.
DE RecName: Full=B3 domain-containing protein Os11g0197600;
GN OrderedLocusNames=Os11g0197600, LOC_Os11g09160;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAX96729.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC139170; AAX96729.1; ALT_SEQ; Genomic_DNA.
DR EMBL; DP000010; ABA91888.2; -; Genomic_DNA.
DR EMBL; AP008217; BAF27794.1; -; Genomic_DNA.
DR EMBL; AP014967; BAT13054.1; -; Genomic_DNA.
DR EMBL; AK067571; BAG90478.1; -; mRNA.
DR EMBL; AK101941; BAG95305.1; -; mRNA.
DR RefSeq; XP_015615373.1; XM_015759887.1.
DR AlphaFoldDB; Q2R9D2; -.
DR SMR; Q2R9D2; -.
DR STRING; 4530.OS11T0197600-01; -.
DR PaxDb; Q2R9D2; -.
DR PRIDE; Q2R9D2; -.
DR EnsemblPlants; Os11t0197600-01; Os11t0197600-01; Os11g0197600.
DR GeneID; 4349997; -.
DR Gramene; Os11t0197600-01; Os11t0197600-01; Os11g0197600.
DR KEGG; osa:4349997; -.
DR eggNOG; ENOG502QSIS; Eukaryota.
DR HOGENOM; CLU_015069_1_1_1; -.
DR InParanoid; Q2R9D2; -.
DR OMA; VFTYDKR; -.
DR OrthoDB; 889497at2759; -.
DR Proteomes; UP000000763; Chromosome 11.
DR Proteomes; UP000059680; Chromosome 11.
DR Genevisible; Q2R9D2; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd10017; B3_DNA; 2.
DR Gene3D; 2.40.330.10; -; 2.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR044837; REM16-like.
DR PANTHER; PTHR31391; PTHR31391; 2.
DR Pfam; PF02362; B3; 2.
DR SMART; SM01019; B3; 2.
DR SUPFAM; SSF101936; SSF101936; 2.
DR PROSITE; PS50863; B3; 2.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Repeat; Transcription;
KW Transcription regulation.
FT CHAIN 1..406
FT /note="B3 domain-containing protein Os11g0197600"
FT /id="PRO_0000376990"
FT DNA_BIND 30..123
FT /note="TF-B3 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT DNA_BIND 298..393
FT /note="TF-B3 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 1..20
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 199..245
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 211..243
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 406 AA; 45776 MW; B87C0EECC8EFC9B8 CRC64;
MVVREKQGGR MGKGKGKGKE KECDINCFGR SFFRVLLTLQ SLERMKIPSS FNQCLQNQPT
GMVSLVDRSG NKWSAELTSD SEGFFFVHGW KEFVRDNSIQ CGQFLVFTYD KRSQFSVTVF
EPSGIDKIST FSAHPSKNVI IKTESDEGGM VTAAITTEKM APALKENNGI TGKRTRDVDY
LMEDRVVVFK KSSEANVCES SRRKRAGASA GKSKVTSTSH NSTRGSSCSS DEDNSSSKSP
NPPFLMRFLS GEVSRRGRCV SKGQRQLTVI SQRRPVTEAE KDHALQRARE FKSKNPFAVQ
IMMESYVYVG FFMNIPCEFV RECLPHTNKR ITLWDPQGKA WEVNYVYYSD RSVGSFSGGW
GKFAVGNNLE KFDVCVFELV QKDNIKVHIY RVVPEITPHK LRSDPK