Y1208_ORYSJ
ID Y1208_ORYSJ Reviewed; 490 AA.
AC Q2QMT6;
DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot.
DT 24-JAN-2006, sequence version 1.
DT 03-AUG-2022, entry version 81.
DE RecName: Full=B3 domain-containing protein LOC_Os12g40080;
GN OrderedLocusNames=Os12g0591400, LOC_Os12g40080;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
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DR EMBL; DP000011; ABA99155.1; -; Genomic_DNA.
DR EMBL; AP008218; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AP014968; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR AlphaFoldDB; Q2QMT6; -.
DR SMR; Q2QMT6; -.
DR PaxDb; Q2QMT6; -.
DR PRIDE; Q2QMT6; -.
DR eggNOG; ENOG502S27N; Eukaryota.
DR HOGENOM; CLU_015069_0_2_1; -.
DR InParanoid; Q2QMT6; -.
DR Proteomes; UP000000763; Chromosome 12.
DR Proteomes; UP000059680; Chromosome 12.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd10017; B3_DNA; 3.
DR Gene3D; 2.40.330.10; -; 3.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR044837; REM16-like.
DR PANTHER; PTHR31391; PTHR31391; 1.
DR Pfam; PF02362; B3; 3.
DR SMART; SM01019; B3; 3.
DR SUPFAM; SSF101936; SSF101936; 3.
DR PROSITE; PS50863; B3; 3.
PE 3: Inferred from homology;
KW DNA-binding; Nucleus; Reference proteome; Repeat; Transcription;
KW Transcription regulation.
FT CHAIN 1..490
FT /note="B3 domain-containing protein LOC_Os12g40080"
FT /id="PRO_0000376991"
FT DNA_BIND 24..117
FT /note="TF-B3 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT DNA_BIND 236..331
FT /note="TF-B3 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT DNA_BIND 389..487
FT /note="TF-B3 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 161..191
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 161..182
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 490 AA; 55900 MW; 396EBF273F32C070 CRC64;
MEKSHRVCKN CVANHYWLHM DNHGKSFIKV MITDFKNGVT IPAKFARNFG GQMSGTVKLE
TRNGKTYEVQ VAKELNNLVL RSGWERFASA YELEKGDILV FIYSGNSHFK VWIYDPSACE
KGLPCIITEQ LPRVQQRSIS HNNHTQLKRN AKSAKLYVDS SGHSKETSEI NPANSPSWKP
TERVPSSEEL DEPVDLANVQ KATKSFYSLP RMCNMTSAQK AEVDALEKRI KPQIPFYITV
MDKASATDGL LAISKDYAVS YLLDKNETIK LCHSGRSMTW DISLDIDTDD QYALSTGWLD
FIRNNHLQEG DICVFEASKN KRGVALIFHP LKQSHHPKPP GCVPSTKFPR HGVSKPNYIV
SRFTTLSGQL KIKVEAKVQA IQSEIPIFVA VMRESFIRGR SRYMCFSAKY AAKYLPREKN
KIMRLRLPNK SYKYKAVFKI NNKVHKLGGG WGKFVDDNKI KLGDICLFQL MKNKKKLMMM
VHIIRKSEFC