CAPSD_AMVST
ID CAPSD_AMVST Reviewed; 218 AA.
AC P03590; P03592;
DT 21-JUL-1986, integrated into UniProtKB/Swiss-Prot.
DT 23-JAN-2007, sequence version 2.
DT 03-AUG-2022, entry version 79.
DE RecName: Full=Capsid protein;
DE Short=CP;
DE AltName: Full=Coat protein;
GN ORFNames=ORF3b;
OS Alfalfa mosaic virus (strain Strasbourg).
OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
OC Martellivirales; Bromoviridae; Alfamovirus.
OX NCBI_TaxID=12324;
OH NCBI_TaxID=4045; Apium graveolens (Celery).
OH NCBI_TaxID=83862; Astragalus glycyphyllos (Wild liquorice).
OH NCBI_TaxID=4072; Capsicum annuum (Capsicum pepper).
OH NCBI_TaxID=41386; Caryopteris incana.
OH NCBI_TaxID=3827; Cicer arietinum (Chickpea) (Garbanzo).
OH NCBI_TaxID=3847; Glycine max (Soybean) (Glycine hispida).
OH NCBI_TaxID=35936; Lablab purpureus (Hyacinth bean) (Dolichos lablab).
OH NCBI_TaxID=4236; Lactuca sativa (Garden lettuce).
OH NCBI_TaxID=3864; Lens culinaris (Lentil) (Cicer lens).
OH NCBI_TaxID=3869; Lupinus.
OH NCBI_TaxID=145753; Malva parviflora (Little mallow) (Cheeseweed mallow).
OH NCBI_TaxID=3879; Medicago sativa (Alfalfa).
OH NCBI_TaxID=4097; Nicotiana tabacum (Common tobacco).
OH NCBI_TaxID=3885; Phaseolus vulgaris (Kidney bean) (French bean).
OH NCBI_TaxID=23113; Philadelphus.
OH NCBI_TaxID=3888; Pisum sativum (Garden pea).
OH NCBI_TaxID=4081; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).
OH NCBI_TaxID=4113; Solanum tuberosum (Potato).
OH NCBI_TaxID=157662; Teramnus repens.
OH NCBI_TaxID=60916; Trifolium incarnatum (Crimson clover).
OH NCBI_TaxID=85293; Viburnum opulus (High-bush cranberry).
OH NCBI_TaxID=3916; Vigna radiata var. radiata (Mung bean) (Phaseolus aureus).
OH NCBI_TaxID=3917; Vigna unguiculata (Cowpea).
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RX PubMed=6205697; DOI=10.1016/0300-9084(84)90023-3;
RA Ravelonandro M., Pinck M., Pinck L.;
RT "Complete nucleotide sequence of RNA 3 from alfalfa mosaic virus, strain
RT S.";
RL Biochimie 66:395-402(1984).
RN [2]
RP PROTEIN SEQUENCE OF 2-218, AND ACETYLATION AT SER-2.
RX PubMed=884129; DOI=10.1016/0005-2795(77)90078-2;
RA Collot D., Peter R., Das B., Wolff B., Duranton H.;
RT "Determination of the primary structure of alfalfa mosaic virus (strain S)
RT coat protein. II. Complete sequence of the protein.";
RL Biochim. Biophys. Acta 492:267-283(1977).
CC -!- FUNCTION: Capsid protein. Binds to the to the 3' end of the
CC nonpolyadenylated viral RNA and is involved in viral RNA translation
CC initiation. Probably binds RNA and plays a role in packaging (By
CC similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Virion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the alphamovirus/ilarvirus capsid protein
CC family. {ECO:0000305}.
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DR EMBL; X00819; CAA25393.1; -; Genomic_RNA.
DR PIR; A04200; VCBV2S.
DR PIR; A90622; VCFMS.
DR SMR; P03590; -.
DR iPTMnet; P03590; -.
DR GO; GO:0039617; C:T=3 icosahedral viral capsid; IEA:UniProtKB-KW.
DR GO; GO:0019013; C:viral nucleocapsid; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006413; P:translational initiation; IEA:InterPro.
DR InterPro; IPR002681; Coat_Ilarvirus.
DR Pfam; PF01787; Ilar_coat; 1.
PE 1: Evidence at protein level;
KW Acetylation; Capsid protein; Direct protein sequencing; Ribonucleoprotein;
KW RNA-binding; T=3 icosahedral capsid protein; Viral nucleoprotein; Virion.
FT INIT_MET 1
FT /note="Removed; by host"
FT /evidence="ECO:0000269|PubMed:884129"
FT CHAIN 2..218
FT /note="Capsid protein"
FT /id="PRO_0000083191"
FT REGION 1..25
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOD_RES 2
FT /note="N-acetylserine; by host"
FT /evidence="ECO:0000269|PubMed:884129"
FT CONFLICT 55..56
FT /note="WQ -> AV (in Ref. 2; AA sequence)"
FT /evidence="ECO:0000305"
FT CONFLICT 68
FT /note="N -> D (in Ref. 2; AA sequence)"
FT /evidence="ECO:0000305"
FT CONFLICT 126
FT /note="N -> D (in Ref. 2; AA sequence)"
FT /evidence="ECO:0000305"
FT CONFLICT 157
FT /note="Q -> S (in Ref. 2; AA sequence)"
FT /evidence="ECO:0000305"
FT CONFLICT 176
FT /note="Q -> E (in Ref. 2; AA sequence)"
FT /evidence="ECO:0000305"
FT CONFLICT 182
FT /note="N -> D (in Ref. 2; AA sequence)"
FT /evidence="ECO:0000305"
FT CONFLICT 185
FT /note="Y -> F (in Ref. 2; AA sequence)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 218 AA; 23945 MW; 8CB46D3680CF75D0 CRC64;
MSSSQKKAGG KAGKPTKRSQ NYAALRKAQL PKPPALKVPV AKPTNTILPQ TGCVWQSLGT
PLSLSSFNGL GVRFLYSFLK DFTGPRILEE DLIYRMVFSI TPSHAGTFCL TDDVTTEDGR
AVAHGNPMQE FPHGAFHANE KFGFELVFTA PTHAGMQNQN FKHSYAVALC LDFDAQPEGS
KNPSYRFNEV WVERKAFPRA GPLRSLITVG LLDEADDL
