Y1237_ORYSJ
ID Y1237_ORYSJ Reviewed; 719 AA.
AC Q5JNA1; A0A0P0V7M2;
DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot.
DT 15-FEB-2005, sequence version 1.
DT 03-AUG-2022, entry version 87.
DE RecName: Full=B3 domain-containing protein Os03g0120900;
GN OrderedLocusNames=Os01g0723700, LOC_Os01g52540; ORFNames=P0022F10.18;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF06023.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP003229; BAD87058.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF06023.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014957; BAS74112.1; -; Genomic_DNA.
DR EMBL; AK243092; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015614209.1; XM_015758723.1.
DR AlphaFoldDB; Q5JNA1; -.
DR SMR; Q5JNA1; -.
DR PaxDb; Q5JNA1; -.
DR PRIDE; Q5JNA1; -.
DR EnsemblPlants; Os01t0723700-01; Os01t0723700-01; Os01g0723700.
DR GeneID; 4324719; -.
DR Gramene; Os01t0723700-01; Os01t0723700-01; Os01g0723700.
DR KEGG; osa:4324719; -.
DR eggNOG; ENOG502SYBV; Eukaryota.
DR HOGENOM; CLU_354257_0_0_1; -.
DR InParanoid; Q5JNA1; -.
DR OMA; DENMHFM; -.
DR OrthoDB; 319388at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q5JNA1; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR Pfam; PF02362; B3; 1.
DR SMART; SM01019; B3; 1.
DR SUPFAM; SSF101936; SSF101936; 1.
DR PROSITE; PS50863; B3; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..719
FT /note="B3 domain-containing protein Os03g0120900"
FT /id="PRO_0000378043"
FT DNA_BIND 7..110
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 328..381
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 412..443
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 352..369
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 427..443
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 719 AA; 82661 MW; 18450CF9DE741ADE CRC64;
MEEVRRHHHF IKVMVGEFAR RLEIPQGFLI HIPEVDHSTF DASLPSSAKG TLQNSEGKTW
PVELEKLDGH VFLTTGWAKF VEDNSLREYE FLLFRYDDNM HFMVLPFGLN ACEKVIRSSG
SPQGKLPCDI FCCTKRGRDG DRLTEAANSL TPSHSQVLQR TTQGHELISP QSFPDQHEVC
GSKDGLDEHL SLNGPMEDDK ANAIAEVMSI LDVDKVTVEL FCAMLVFYKW NVDAVAEDFD
ICRGKPQIQN LFLKHKLHFQ FDIVKRKLRK FFPPDDYYSS PILESRKCSL EEPKLSNQPL
QCDLTTEKCR LVDEHDLCNF SQKKRRKRGS FCSPETPRRS PRLARQNNSH DSAENTLKER
SEERQPSPDS MIDQAESRSE QACLCHDKTD SGSLFQDSKK VKPAHGEVDL CEEPQHNQGE
NEGNLDQVNN KETDEEQIER NAVETSESFT RRGCIKSSPA SCEVPACLRI NELSLTWKPA
EHVNPLEKVL LDIQRDNFMK TISHVQGIIR NHPSDLLTAD VITVVVQKEI FKWNCCLKDR
DAQRIVNALL EHARKIKEMH NFNSEMRKEE FSAKLKVHLK WQLKEVETIY TSLELDYKKA
TSDDNIAFSM LHDKKKKLHN LQDEITGLQQ SLEMKKDEMQ KLAHQVAEHE SVFQKSLMER
LRIKEVMKGY EQTLAEVKVQ LTSTEVGSID IEALVKVEMD NMTKEIELSK ESLLNITFH
