Y1341_ORYSJ
ID Y1341_ORYSJ Reviewed; 495 AA.
AC Q0JP99; A0A0P0V028; Q5NAW9;
DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 83.
DE RecName: Full=B3 domain-containing protein Os01g0234100;
GN OrderedLocusNames=Os01g0234100, LOC_Os01g13300; ORFNames=P0702F03.19;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD81380.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP002481; BAD81380.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008207; BAF04429.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS71203.1; -; Genomic_DNA.
DR EMBL; AK106332; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015623792.1; XM_015768306.1.
DR AlphaFoldDB; Q0JP99; -.
DR SMR; Q0JP99; -.
DR PaxDb; Q0JP99; -.
DR PRIDE; Q0JP99; -.
DR EnsemblPlants; Os01t0234100-01; Os01t0234100-01; Os01g0234100.
DR GeneID; 4324291; -.
DR Gramene; Os01t0234100-01; Os01t0234100-01; Os01g0234100.
DR KEGG; osa:4324291; -.
DR eggNOG; ENOG502QQS4; Eukaryota.
DR HOGENOM; CLU_041497_0_0_1; -.
DR InParanoid; Q0JP99; -.
DR OMA; HQRRTYY; -.
DR OrthoDB; 789559at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q0JP99; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR044837; REM16-like.
DR PANTHER; PTHR31391; PTHR31391; 1.
DR Pfam; PF02362; B3; 1.
DR SMART; SM01019; B3; 1.
DR SUPFAM; SSF101936; SSF101936; 1.
DR PROSITE; PS50863; B3; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..495
FT /note="B3 domain-containing protein Os01g0234100"
FT /id="PRO_0000376944"
FT DNA_BIND 152..243
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 1..25
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 88..108
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 268..289
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 453
FT /note="K -> E (in Ref. 5; AK106332)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 495 AA; 55530 MW; 23E0B6BB0C4E86CE CRC64;
MAIDQPIKKR GRPPGSKNTK NKMEQKMELV HQRLALLDSS SGSDRDDDIG PRAIIIDCDE
DDTDDVMEVV PLKMLMPKEV ENEQRTVPGI PQTCNTQNTS NGRTNTTEVP VKGQNKCASY
LPKKSSVQAF CGSAMKRAQE IQTKLPAEHP SFVKHMLHSH VVSGFWLGLP AGFCNKYLPK
HDTDIVLEDE NGNNHNTNYL GGKQGLSAGW RGFAINHDIK VGDVVVFELV STTKFKVHII
RDKNISPTDR APGLKSFYAC KKRKISKEAT DNATKPKEDP ETTRVSSKVA HDDTQNLVHE
AIDGIRFSDS EMSFDDVMSY SNFNIVVDGL VIDCKFPDHQ RRTYYELCCA QKSFLHRHLL
RQLSLTLVVG VIMETINIAE GIRACGAGTS SQEDFLIWKK TLQSFDLLGM NVAFLLKRVD
DILGLPEQPR DPSECSKYNE LKLERSRAGE KVKALESMML TVKDVLKKID AEMEEMESSV
RNHDIALRKI ATAPW
