Y1342_ARATH
ID Y1342_ARATH Reviewed; 697 AA.
AC Q9C810;
DT 30-AUG-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 25-MAY-2022, entry version 122.
DE RecName: Full=PHD finger protein At1g33420;
GN OrderedLocusNames=At1g33420; ORFNames=F10C21.9;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP STRUCTURE BY NMR OF 595-653.
RG RIKEN structural genomics initiative (RSGI);
RT "Solution structure of PHD domain in PHD finger family protein.";
RL Submitted (NOV-2004) to the PDB data bank.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
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DR EMBL; AC051630; AAG51204.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE31592.1; -; Genomic_DNA.
DR EMBL; AY035054; AAK59559.1; -; mRNA.
DR EMBL; AY051061; AAK93738.1; -; mRNA.
DR PIR; H86457; H86457.
DR RefSeq; NP_564424.1; NM_103067.1.
DR PDB; 1WEE; NMR; -; A=595-653.
DR PDBsum; 1WEE; -.
DR AlphaFoldDB; Q9C810; -.
DR SMR; Q9C810; -.
DR STRING; 3702.AT1G33420.1; -.
DR PaxDb; Q9C810; -.
DR PRIDE; Q9C810; -.
DR EnsemblPlants; AT1G33420.1; AT1G33420.1; AT1G33420.
DR GeneID; 840235; -.
DR Gramene; AT1G33420.1; AT1G33420.1; AT1G33420.
DR KEGG; ath:AT1G33420; -.
DR Araport; AT1G33420; -.
DR TAIR; locus:2006882; AT1G33420.
DR eggNOG; KOG1844; Eukaryota.
DR HOGENOM; CLU_012141_0_0_1; -.
DR InParanoid; Q9C810; -.
DR OrthoDB; 227961at2759; -.
DR PhylomeDB; Q9C810; -.
DR EvolutionaryTrace; Q9C810; -.
DR PRO; PR:Q9C810; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9C810; differential.
DR Genevisible; Q9C810; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR Gene3D; 3.30.40.10; -; 1.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR Pfam; PF00628; PHD; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF57903; SSF57903; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Metal-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..697
FT /note="PHD finger protein At1g33420"
FT /id="PRO_0000059335"
FT ZN_FING 603..653
FT /note="PHD-type"
FT STRAND 601..604
FT /evidence="ECO:0007829|PDB:1WEE"
FT STRAND 618..620
FT /evidence="ECO:0007829|PDB:1WEE"
FT STRAND 622..624
FT /evidence="ECO:0007829|PDB:1WEE"
FT STRAND 626..629
FT /evidence="ECO:0007829|PDB:1WEE"
FT TURN 630..634
FT /evidence="ECO:0007829|PDB:1WEE"
FT HELIX 648..653
FT /evidence="ECO:0007829|PDB:1WEE"
SQ SEQUENCE 697 AA; 78094 MW; 1ADC87D95DA4B937 CRC64;
MAVMNGGRAT KRARRSNRIS ADLYDFSTFP TAEINGESTT LPPFRDGVRT FLATHARVTF
PPSTLFSSLM TWQIMLRPGD STDGSDLSSK LVSLDVVEED VTRSSRSVYC EHCCVVGWSS
HPVCRKRYRF IIRSGGDTKA CTRCGNTQNL SEGSNCKWCS MALDIENWVY SQLEDNTHLL
HGVIHSNGYA HLLCLNGREG GSGFLTGRAI MDFWDRLCSS LAVRKASVMD VSRKYGMDYR
LLHGITRGCS WYSEWGYEFK SGSYALTKEA YQSAVDTLSA IPLSEFLFQG RKPRTQLHSI
ISFYQSLSCS ELVTVKDLFS FLLQMIRENS SKPASKSSVL CAWSKSDVER VQQTMVKILK
ASGRPQANWV TRWALKRSIC KSASPQLIDY CLKHFGGVLV DDGSRVVSSR CNPGSNDFEY
RLESVNNVHR LSNQDVNNAS VEHVKQDLRY LYETLLHPQT MAEFRSRATR EKMIDAATKI
LDCKHFIKDY LSSTVNPVAI NLWCCVELSD ELKESPAPPP ERLVLPLNAT VSDLKIEAAK
AFQEVYAMFK RFEVEELLGY GSIDDSITLK FLVGTNGVIR IKGRCSKHGL LRYRMERGVD
NWKVDCKCGT KDDDGERMLA CDGCGVWHHT RCIGINNADA LPSKFLCFRC IELYSKKPKQ
SKKERGSSQV PKAGFVCRGE SAAMGSGSNL SVTLRVG
