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CAPSD_CFMVN
ID   CAPSD_CFMVN             Reviewed;         254 AA.
AC   Q66012; Q0PW23;
DT   28-JUN-2011, integrated into UniProtKB/Swiss-Prot.
DT   01-NOV-1996, sequence version 1.
DT   02-JUN-2021, entry version 63.
DE   RecName: Full=Capsid protein;
DE            Short=CP;
DE   AltName: Full=Coat protein;
DE   AltName: Full=Protein P4;
GN   ORFNames=ORF3;
OS   Cocksfoot mottle virus (isolate Dactylis glomerata/Norway/CfMV-NO/1995)
OS   (CfMV).
OC   Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
OC   Sobelivirales; Solemoviridae; Sobemovirus.
OX   NCBI_TaxID=1005059;
OH   NCBI_TaxID=4509; Dactylis glomerata (Orchard grass) (Cock's-foot grass).
OH   NCBI_TaxID=4565; Triticum aestivum (Wheat).
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC RNA], AND PROTEIN SEQUENCE OF 3-19.
RX   PubMed=7595389; DOI=10.1099/0022-1317-76-11-2817;
RA   Maekinen K., Tamm T., Naess V., Truve E., Puurand U., Munthe T., Saarma M.;
RT   "Characterization of cocksfoot mottle sobemovirus genomic RNA and sequence
RT   comparison with related viruses.";
RL   J. Gen. Virol. 76:2817-2825(1995).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RX   PubMed=16732485; DOI=10.1007/s11262-005-6917-x;
RA   Meier M., Paves H., Olspert A., Tamm T., Truve E.;
RT   "P1 protein of Cocksfoot mottle virus is indispensable for the systemic
RT   spread of the virus.";
RL   Virus Genes 32:321-326(2006).
CC   -!- FUNCTION: Capsid protein self-assembles to form an icosahedral capsid
CC       with a T=3 symmetry, about 30 nm in diameter, and consisting of 180
CC       capsid proteins. Each icosahedral unit contains three protein subunits
CC       (Potential). {ECO:0000305}.
CC   -!- SUBCELLULAR LOCATION: Virion {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the icosahedral plant coat protein family.
CC       {ECO:0000305}.
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DR   EMBL; Z48630; CAA88562.1; -; Genomic_RNA.
DR   EMBL; DQ680848; ABG73620.1; -; Genomic_RNA.
DR   RefSeq; NP_941377.1; NC_002618.2.
DR   SMR; Q66012; -.
DR   GeneID; 2654594; -.
DR   KEGG; vg:2654594; -.
DR   Proteomes; UP000001461; Genome.
DR   Proteomes; UP000008994; Genome.
DR   GO; GO:0039617; C:T=3 icosahedral viral capsid; IEA:UniProtKB-KW.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR   Gene3D; 2.60.120.20; -; 1.
DR   InterPro; IPR000937; Capsid_prot_S-dom_vir.
DR   InterPro; IPR029053; Viral_coat.
DR   Pfam; PF00729; Viral_coat; 1.
DR   PROSITE; PS00555; ICOSAH_VIR_COAT_S; 1.
PE   1: Evidence at protein level;
KW   Capsid protein; Direct protein sequencing; Reference proteome; RNA-binding;
KW   T=3 icosahedral capsid protein; Virion.
FT   CHAIN           1..254
FT                   /note="Capsid protein"
FT                   /id="PRO_0000409863"
FT   REGION          1..61
FT                   /note="R domain, interaction with RNA"
FT                   /evidence="ECO:0000250"
FT   REGION          1..53
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          62..245
FT                   /note="S domain, virion shell"
FT                   /evidence="ECO:0000250"
FT   REGION          246..254
FT                   /note="P domain, projecting"
FT                   /evidence="ECO:0000250"
FT   CONFLICT        174
FT                   /note="V -> M (in Ref. 2; ABG73620)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   254 AA;  27610 MW;  871321630970DC9C CRC64;
     MMVRKGAATK APQQPKPKAQ QQPGGRRRRR GRSMEPVSRP LNPPAAVGST LKAGRGRTAG
     VSDWFDTGMI TSYLGGFQRT AGTTDSQVFI VSPAALDRVG TIAKAYALWR PKHWEIVYLP
     RCSTQTDGSI EMGFLLDYAD SVPTNTRTMA SSTSFTTSNV WGGGDGSSLL HTSVKSMGNA
     VTSALPCDEF SNKWFKLSWS TPEESENAHL TDTYVPARFV VRSDFPVVTA DQPGHLWLRS
     RILLKGSVSP STNL
 
 
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