Y1396_ARATH
ID Y1396_ARATH Reviewed; 302 AA.
AC Q8RXM6; Q9LR96;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2002, sequence version 1.
DT 03-AUG-2022, entry version 84.
DE RecName: Full=UPF0725 protein At1g23960;
GN OrderedLocusNames=At1g23960; ORFNames=T23E23.14;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2, CLEAVAGE OF INITIATOR
RP METHIONINE [LARGE SCALE ANALYSIS], AND IDENTIFICATION BY MASS SPECTROMETRY
RP [LARGE SCALE ANALYSIS].
RX PubMed=22223895; DOI=10.1074/mcp.m111.015131;
RA Bienvenut W.V., Sumpton D., Martinez A., Lilla S., Espagne C., Meinnel T.,
RA Giglione C.;
RT "Comparative large-scale characterisation of plant vs. mammal proteins
RT reveals similar and idiosyncratic N-alpha acetylation features.";
RL Mol. Cell. Proteomics 11:M111.015131-M111.015131(2012).
CC -!- SIMILARITY: Belongs to the UPF0725 (EMB2204) family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF87154.1; Type=Erroneous gene model prediction; Note=The predicted gene At1g23960 has been split into 2 genes: At1g23960 and At1g23970.; Evidence={ECO:0000305};
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DR EMBL; AC002423; AAF87154.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE30458.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE30459.1; -; Genomic_DNA.
DR EMBL; AY080804; AAL87285.1; -; mRNA.
DR EMBL; AY117256; AAM51331.1; -; mRNA.
DR PIR; G86373; G86373.
DR RefSeq; NP_001031086.1; NM_001036009.1.
DR RefSeq; NP_173807.2; NM_102243.4.
DR AlphaFoldDB; Q8RXM6; -.
DR SMR; Q8RXM6; -.
DR iPTMnet; Q8RXM6; -.
DR PaxDb; Q8RXM6; -.
DR PRIDE; Q8RXM6; -.
DR ProteomicsDB; 242434; -.
DR DNASU; 839007; -.
DR EnsemblPlants; AT1G23960.1; AT1G23960.1; AT1G23960.
DR EnsemblPlants; AT1G23960.2; AT1G23960.2; AT1G23960.
DR GeneID; 839007; -.
DR Gramene; AT1G23960.1; AT1G23960.1; AT1G23960.
DR Gramene; AT1G23960.2; AT1G23960.2; AT1G23960.
DR KEGG; ath:AT1G23960; -.
DR Araport; AT1G23960; -.
DR TAIR; locus:2199877; AT1G23960.
DR HOGENOM; CLU_053767_0_1_1; -.
DR OrthoDB; 1290947at2759; -.
DR PhylomeDB; Q8RXM6; -.
DR PRO; PR:Q8RXM6; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q8RXM6; baseline and differential.
DR Genevisible; Q8RXM6; AT.
DR InterPro; IPR006462; MS5.
DR PANTHER; PTHR31260; PTHR31260; 1.
DR Pfam; PF04776; protein_MS5; 1.
DR TIGRFAMs; TIGR01572; A_thl_para_3677; 1.
PE 1: Evidence at protein level;
KW Acetylation; Reference proteome.
FT INIT_MET 1
FT /note="Removed"
FT /evidence="ECO:0007744|PubMed:22223895"
FT CHAIN 2..302
FT /note="UPF0725 protein At1g23960"
FT /id="PRO_0000363127"
FT MOD_RES 2
FT /note="N-acetylalanine"
FT /evidence="ECO:0007744|PubMed:22223895"
SQ SEQUENCE 302 AA; 34825 MW; C39AFCF6CE3BAD6B CRC64;
MATDDFFSLQ REYWRQVAES DGFDIESVQI PPSMYGRING LIPHNCEINT PLPYRVLGKH
YAKLGLHRYN MLKGTKFEFG RLMKFNMLQN CVASFYITLE AYDYGVPGTS HPQTFQVRID
EKIFGSLDLT VSIARRTTDE VTTKKPFIHH YHGGAVADNI IFKGELPDWP SDDVLKDRER
FYVIMNESEW RATAWISLYL ELVLCAHDKF ITNTDLSRLS IEKVAIETSI GDALLYERLE
AKSANVYIWF KRLEKPRVPQ QVFVTGMDVE RKAIIRRVMD STGYLTLVGK LCGGVTKVRQ
FN
