Y1397_ARATH
ID Y1397_ARATH Reviewed; 378 AA.
AC Q94A88; Q8LA04; Q9LR96;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2001, sequence version 1.
DT 03-AUG-2022, entry version 90.
DE RecName: Full=UPF0725 protein At1g23970;
GN OrderedLocusNames=At1g23970; ORFNames=T23E23.26;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q94A88-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q94A88-2; Sequence=VSP_036247;
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to a competing donor splice
CC site. {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the UPF0725 (EMB2204) family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF87154.1; Type=Erroneous gene model prediction; Note=The predicted gene At1g23960 has been split into 2 genes: At1g23960 and At1g23970.; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC002423; AAF87154.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE30462.1; -; Genomic_DNA.
DR EMBL; AY049272; AAK83614.1; -; mRNA.
DR EMBL; AY129495; AAM91081.1; -; mRNA.
DR EMBL; AY088107; AAM65653.1; -; mRNA.
DR PIR; G86373; G86373.
DR RefSeq; NP_849702.1; NM_179371.3. [Q94A88-1]
DR AlphaFoldDB; Q94A88; -.
DR SMR; Q94A88; -.
DR PaxDb; Q94A88; -.
DR PRIDE; Q94A88; -.
DR ProteomicsDB; 243030; -. [Q94A88-1]
DR DNASU; 839008; -.
DR EnsemblPlants; AT1G23970.2; AT1G23970.2; AT1G23970. [Q94A88-1]
DR GeneID; 839008; -.
DR Gramene; AT1G23970.2; AT1G23970.2; AT1G23970. [Q94A88-1]
DR KEGG; ath:AT1G23970; -.
DR Araport; AT1G23970; -.
DR TAIR; locus:2199887; AT1G23970.
DR InParanoid; Q94A88; -.
DR OMA; VNESENY; -.
DR PhylomeDB; Q94A88; -.
DR PRO; PR:Q94A88; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q94A88; baseline and differential.
DR Genevisible; Q94A88; AT.
DR InterPro; IPR006462; MS5.
DR PANTHER; PTHR31260; PTHR31260; 2.
DR Pfam; PF04776; protein_MS5; 1.
DR TIGRFAMs; TIGR01572; A_thl_para_3677; 2.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome.
FT CHAIN 1..378
FT /note="UPF0725 protein At1g23970"
FT /id="PRO_0000363126"
FT VAR_SEQ 149..153
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|Ref.4"
FT /id="VSP_036247"
FT CONFLICT 134
FT /note="T -> S (in Ref. 4; AAM65653)"
FT /evidence="ECO:0000305"
FT CONFLICT 342
FT /note="D -> G (in Ref. 4; AAM65653)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 378 AA; 42748 MW; 55F74F1FEAF6DAD4 CRC64;
MTTEEESLSA AEEGYNVQRD YWRQAEESDG FDIENIKLPP GMHGRVMGLI TYNCQLCYRY
PFPVLVKLYA KFGLHRYNLI KGTSFELAAL MKFNMLQNYM SSFYMTLLAH DPDPAASSSQ
KTFQVRVDEQ QFGTLGINCS IARPKHEGDL LEVSTKTPFI PHFHGGALGD GIFKGELPDC
LSDDALNALM EAVSKDELPE HVLDDALYAR AGGIFQGELP DWPSDDALND GKRFYMLKES
EWQATDWISM YLELVITTTD RSITETVQKP EVLSKLEIVK VAIETATKDE EPSNERLKAY
RAHFYITFKG LAEPRAPRQV FEIGEHVERQ AIVRRVMGHR GDLTLKGKLC GGQYIKRRSL
ALKSGEESPN CKKQTRVG
