Y1410_ORYSJ
ID Y1410_ORYSJ Reviewed; 365 AA.
AC Q9AWS0; A0A0P0UYP7;
DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 03-AUG-2022, entry version 122.
DE RecName: Full=AP2/ERF and B3 domain-containing protein Os01g0141000;
GN OrderedLocusNames=Os01g0141000, LOC_Os01g04800; ORFNames=P0480E02.32;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326,
CC ECO:0000255|PROSITE-ProRule:PRU00366}.
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DR EMBL; AP002913; BAB21218.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF03896.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS70316.1; -; Genomic_DNA.
DR EMBL; AK065008; BAG89320.1; -; mRNA.
DR RefSeq; XP_015622259.1; XM_015766773.1.
DR AlphaFoldDB; Q9AWS0; -.
DR SMR; Q9AWS0; -.
DR STRING; 4530.OS01T0141000-01; -.
DR PaxDb; Q9AWS0; -.
DR PRIDE; Q9AWS0; -.
DR EnsemblPlants; Os01t0141000-01; Os01t0141000-01; Os01g0141000.
DR GeneID; 4325479; -.
DR Gramene; Os01t0141000-01; Os01t0141000-01; Os01g0141000.
DR KEGG; osa:4325479; -.
DR eggNOG; ENOG502QRVI; Eukaryota.
DR HOGENOM; CLU_038898_0_0_1; -.
DR InParanoid; Q9AWS0; -.
DR OMA; DWKVQSG; -.
DR OrthoDB; 810704at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q9AWS0; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR CDD; cd00018; AP2; 1.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 1.
DR Gene3D; 3.30.730.10; -; 1.
DR InterPro; IPR001471; AP2/ERF_dom.
DR InterPro; IPR036955; AP2/ERF_dom_sf.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR016177; DNA-bd_dom_sf.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR044800; LEC2-like.
DR PANTHER; PTHR31140; PTHR31140; 1.
DR Pfam; PF00847; AP2; 1.
DR Pfam; PF02362; B3; 1.
DR SMART; SM00380; AP2; 1.
DR SMART; SM01019; B3; 1.
DR SUPFAM; SSF101936; SSF101936; 1.
DR SUPFAM; SSF54171; SSF54171; 1.
DR PROSITE; PS51032; AP2_ERF; 1.
DR PROSITE; PS50863; B3; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..365
FT /note="AP2/ERF and B3 domain-containing protein
FT Os01g0141000"
FT /id="PRO_0000377731"
FT DNA_BIND 68..123
FT /note="AP2/ERF"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00366"
FT DNA_BIND 182..294
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 1..24
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..22
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 365 AA; 39280 MW; 0A1EAD4E7986FE6C CRC64;
MGVVSFSSTS SGASTATTES GGAVRMSPEP VVAVAAAAQQ LPVVKGVDSA DEVVTSRPAA
AAAQQSSRYK GVVPQPNGRW GAQIYERHAR VWLGTFPDEE AAARAYDVAA LRYRGRDAAT
NFPGAAASAA ELAFLAAHSK AEIVDMLRKH TYADELRQGL RRGRGMGARA QPTPSWAREP
LFEKAVTPSD VGKLNRLVVP KQHAEKHFPL RRAASSDSAS AAATGKGVLL NFEDGEGKVW
RFRYSYWNSS QSYVLTKGWS RFVREKGLRA GDTIVFSRSA YGPDKLLFID CKKNNAAAAT
TTCAGDERPT TSGAEPRVVR LFGVDIAGGD CRKRERAVEM GQEVFLLKRQ CVVHQRTPAL
GALLL
