CAPSD_CPVBM
ID CAPSD_CPVBM Reviewed; 1333 AA.
AC Q6TS43;
DT 11-JAN-2011, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 02-JUN-2021, entry version 43.
DE RecName: Full=Capsid protein VP1;
OS Bombyx mori cytoplasmic polyhedrosis virus (BmCPV).
OC Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes;
OC Reovirales; Reoviridae; Spinareovirinae; Cypovirus.
OX NCBI_TaxID=110829;
OH NCBI_TaxID=7091; Bombyx mori (Silk moth).
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RC STRAIN=Guangzhou;
RA Zhang Q., Huang Y.;
RT "Nucleotide sequence of genome segment 1 from Bombyx mori cypovirus.";
RL Submitted (SEP-2003) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP FUNCTION.
RX PubMed=9882369; DOI=10.1128/jvi.73.2.1624-1629.1999;
RA Zhang H., Zhang J., Yu X., Lu X., Zhang Q., Jakana J., Chen D.H., Zhang X.,
RA Zhou Z.H.;
RT "Visualization of protein-RNA interactions in cytoplasmic polyhedrosis
RT virus.";
RL J. Virol. 73:1624-1629(1999).
RN [3]
RP STRUCTURE BY ELECTRON MICROSCOPY (3.88 ANGSTROMS).
RX PubMed=18449192; DOI=10.1038/nature06893;
RA Yu X., Jin L., Zhou Z.H.;
RT "3.88 A structure of cytoplasmic polyhedrosis virus by cryo-electron
RT microscopy.";
RL Nature 453:415-419(2008).
CC -!- FUNCTION: Capsid protein self-assembles to form an icosahedral capsid
CC with a pseudo T=2 symmetry, about 50 nm in diameter, and consisting of
CC 120 capsid proteins. The capsid encapsulates the genomic RNA.
CC {ECO:0000269|PubMed:9882369}.
CC -!- SUBCELLULAR LOCATION: Virion.
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DR EMBL; AY388398; AAQ93375.1; -; Genomic_RNA.
DR PDB; 3CNF; EM; 3.88 A; A/B=1-1333.
DR PDB; 3IZ3; EM; -; B/C=1-1333.
DR PDB; 3IZX; EM; -; B/C=1-1333.
DR PDB; 3J17; EM; 4.10 A; B/C=1-1333.
DR PDB; 3JAY; EM; 3.00 A; B/C=1-1333.
DR PDB; 3JAZ; EM; 3.10 A; B/C=1-1333.
DR PDB; 3JB0; EM; 2.90 A; B/C=1-1333.
DR PDB; 3JB1; EM; 3.10 A; B/C=1-1333.
DR PDB; 3JB2; EM; 3.10 A; B/C=1-1333.
DR PDB; 3JB3; EM; 3.10 A; B/C=1-1333.
DR PDB; 5H0S; EM; 3.30 A; B/C=1-1333.
DR PDBsum; 3CNF; -.
DR PDBsum; 3IZ3; -.
DR PDBsum; 3IZX; -.
DR PDBsum; 3J17; -.
DR PDBsum; 3JAY; -.
DR PDBsum; 3JAZ; -.
DR PDBsum; 3JB0; -.
DR PDBsum; 3JB1; -.
DR PDBsum; 3JB2; -.
DR PDBsum; 3JB3; -.
DR PDBsum; 5H0S; -.
DR SMR; Q6TS43; -.
DR DIP; DIP-59130N; -.
DR IntAct; Q6TS43; 2.
DR EvolutionaryTrace; Q6TS43; -.
DR GO; GO:0039616; C:T=2 icosahedral viral capsid; IEA:UniProtKB-KW.
DR GO; GO:0039625; C:viral inner capsid; IEA:UniProtKB-KW.
PE 1: Evidence at protein level;
KW 3D-structure; Capsid protein; Inner capsid protein;
KW T=2 icosahedral capsid protein; Virion.
FT CHAIN 1..1333
FT /note="Capsid protein VP1"
FT /id="PRO_0000403204"
FT REGION 1..71
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 9..23
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 24..46
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 55..71
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT STRAND 78..82
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 99..101
FT /evidence="ECO:0007829|PDB:3JAZ"
FT STRAND 112..114
FT /evidence="ECO:0007829|PDB:3JAY"
FT STRAND 118..123
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 145..147
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 155..159
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 163..170
FT /evidence="ECO:0007829|PDB:3JB0"
FT TURN 172..174
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 184..196
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 201..208
FT /evidence="ECO:0007829|PDB:3JB0"
FT TURN 210..212
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 215..217
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 221..223
FT /evidence="ECO:0007829|PDB:3JAZ"
FT STRAND 228..232
FT /evidence="ECO:0007829|PDB:3IZX"
FT STRAND 235..237
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 239..244
FT /evidence="ECO:0007829|PDB:3JAY"
FT HELIX 245..259
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 263..266
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 269..271
FT /evidence="ECO:0007829|PDB:3JB1"
FT HELIX 275..277
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 280..283
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 286..288
FT /evidence="ECO:0007829|PDB:3JAY"
FT STRAND 290..293
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 298..301
FT /evidence="ECO:0007829|PDB:3JB0"
FT TURN 302..304
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 308..318
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 320..322
FT /evidence="ECO:0007829|PDB:3IZX"
FT STRAND 327..331
FT /evidence="ECO:0007829|PDB:3JAY"
FT STRAND 332..334
FT /evidence="ECO:0007829|PDB:3JB1"
FT TURN 336..338
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 343..350
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 352..367
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 372..374
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 375..381
FT /evidence="ECO:0007829|PDB:3JB0"
FT TURN 384..386
FT /evidence="ECO:0007829|PDB:3IZX"
FT STRAND 388..390
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 395..397
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 398..400
FT /evidence="ECO:0007829|PDB:3JAY"
FT HELIX 405..418
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 422..437
FT /evidence="ECO:0007829|PDB:3JB0"
FT TURN 451..455
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 457..459
FT /evidence="ECO:0007829|PDB:5H0S"
FT HELIX 460..470
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 477..486
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 505..507
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 508..520
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 522..543
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 545..554
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 556..560
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 566..568
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 577..581
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 582..586
FT /evidence="ECO:0007829|PDB:3JAY"
FT HELIX 587..590
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 598..605
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 612..615
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 617..621
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 627..630
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 632..637
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 642..645
FT /evidence="ECO:0007829|PDB:3IZX"
FT HELIX 647..669
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 674..700
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 702..709
FT /evidence="ECO:0007829|PDB:3JB0"
FT TURN 724..726
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 732..735
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 737..739
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 742..746
FT /evidence="ECO:0007829|PDB:3JB0"
FT TURN 752..756
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 760..762
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 763..768
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 769..771
FT /evidence="ECO:0007829|PDB:3JAY"
FT TURN 773..776
FT /evidence="ECO:0007829|PDB:3JAY"
FT HELIX 797..823
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 824..826
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 829..835
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 838..840
FT /evidence="ECO:0007829|PDB:3IZX"
FT STRAND 846..851
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 852..857
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 859..866
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 880..890
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 894..897
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 904..912
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 916..920
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 925..928
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 941..947
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 948..950
FT /evidence="ECO:0007829|PDB:3JB0"
FT TURN 955..957
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 962..970
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 976..990
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 996..1005
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 1018..1022
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 1024..1026
FT /evidence="ECO:0007829|PDB:3IZX"
FT TURN 1033..1035
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 1038..1040
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 1044..1046
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 1049..1062
FT /evidence="ECO:0007829|PDB:3JB0"
FT TURN 1065..1067
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 1071..1080
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 1097..1100
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 1103..1105
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 1106..1110
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 1112..1120
FT /evidence="ECO:0007829|PDB:3JB0"
FT TURN 1122..1124
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 1127..1130
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 1131..1133
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 1137..1142
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 1149..1161
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 1166..1178
FT /evidence="ECO:0007829|PDB:3JB0"
FT TURN 1180..1182
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 1190..1195
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 1201..1207
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 1209..1211
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 1217..1219
FT /evidence="ECO:0007829|PDB:3IZX"
FT STRAND 1225..1234
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 1238..1246
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 1249..1253
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 1262..1265
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 1272..1274
FT /evidence="ECO:0007829|PDB:5H0S"
FT STRAND 1281..1283
FT /evidence="ECO:0007829|PDB:3IZX"
FT TURN 1290..1292
FT /evidence="ECO:0007829|PDB:3JB0"
FT STRAND 1300..1305
FT /evidence="ECO:0007829|PDB:3JB0"
FT TURN 1307..1309
FT /evidence="ECO:0007829|PDB:3JAY"
FT STRAND 1315..1320
FT /evidence="ECO:0007829|PDB:3JB0"
FT HELIX 1325..1327
FT /evidence="ECO:0007829|PDB:3JB0"
SQ SEQUENCE 1333 AA; 148408 MW; B0C5BA3E3EE0AA06 CRC64;
MHSTNNNSNK RNNEEKHKQP EIDSSANNGE GTSGTRAQTV GDTATEAGVR NETEAGASTR
RQTDGTGLSG TNAKIATASS ARQADVEKPA DVTFTIENVD DVGIMQQKKP PTVVQSRTDV
FNEQFANEAL HPTTKVIFNG LDVNTEVQPL SDDFKQISDP KGYLTYSVKY EDQFTKKDKL
RASEADDRIV GPTVNLFKYG AAVVNIDLNR DFFDTATGID LTKGIPLVQD LLVPIGVTAG
AEQSAEYVSG LLMVLFKVMT DNRLVIVGET TTPMSNTLST VVNNVLRTTY HNNVGVNPAL
LRDFTQVNWL NRDITNMLQQ AGTKYGLGLT ETRLDYVRLV KTIVGHALNI DHFAASVLNI
NLRALMEANV TADDRIKALQ AHSMISTQFH GPNQGALRPE LAFDHDHIIR CLMLAAANYP
RLEGIIVQIN TGYVASANVI RPVSEKRYFP ENLEQNQSAA RLVSAVKARA SEADISSIHL
AIAREVSPMF NVHELKKIAE SFEDPSSIVV VLEFILFALF FPTEFNRIKG DIQNVLLLFF
SRWYPVEYGI FVQRGATYTI NAAGEFEFSG RNEKWDQALY LSEHFPALFS DVPLAGANTI
IAIMRLFTPQ GFLRTDDLAI AANFPRASRN PQTYIPYTNQ RGTVTNEFAS RFRTIVATLA
NVVNERAVQD DMQKATRSCT KQWLRHLETQ FDNIAVAHTD HLSVVYATMS NFMLNFTNNF
SGNHATFKPD QYVITSPEGS YKPIIERQGE TVDGLTIIDT SIVWPILCQC TYPLVRQSGK
GVDAVSIMEE IVYPDPSTTL SQSLSVAQVL SKLTLPDAFI NMILSGGDSV VMRTYQTEAD
DDLDEGIRMT TYDQYLSHIR ERLHITNVPD PIYITGASTP DQIAASVQAT HVAVVLYQSG
VINGPASTYL RENEVLVVMP DYYDVVSRFA NANLQMNNNR YHESVLEIAD IFDQADFIQT
SDAVRQLRAL MPTLSTSQIR HAIERIAQIT DVDSTDYGKL TLRFLGTLTR SLKMQNAQIR
RIRPDGTVLR YDDQIDIEAF RWSRYFLDEL QLRRLSVGLR LITNPRIARR FNGVRIMYLT
DDDPDPDFVP DVPEGYVAVQ YAHRLFSSSL ANKRNRVTYT HPPTGMAYPS PTGRPHVHMT
INERAGMSKL VADNIIASVI KSNWVVDILD IEYTAEVMTP SEGYTQHVDA ESIMTAPKGK
LFHLQFMDGL LRPEPSAFDP PASGEDMRLI YPLQPISVAR SMRAIVNHNE VDRPRGAVAP
SSYEMDTGTL SRNGDLLYSP VANGQVGIPK LEVDHISFSN VVSMMTANIR TGDDMAVERV
NPDDVRAINI RNA
