Y152_RHOPA
ID Y152_RHOPA Reviewed; 167 AA.
AC Q6NDF6;
DT 03-APR-2013, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 85.
DE RecName: Full=S-adenosyl-L-methionine-binding protein RPA0152;
GN OrderedLocusNames=RPA0152;
OS Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).
OC Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
OC Bradyrhizobiaceae; Rhodopseudomonas.
OX NCBI_TaxID=258594;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC BAA-98 / CGA009;
RX PubMed=14704707; DOI=10.1038/nbt923;
RA Larimer F.W., Chain P., Hauser L., Lamerdin J.E., Malfatti S., Do L.,
RA Land M.L., Pelletier D.A., Beatty J.T., Lang A.S., Tabita F.R.,
RA Gibson J.L., Hanson T.E., Bobst C., Torres y Torres J.L., Peres C.,
RA Harrison F.H., Gibson J., Harwood C.S.;
RT "Complete genome sequence of the metabolically versatile photosynthetic
RT bacterium Rhodopseudomonas palustris.";
RL Nat. Biotechnol. 22:55-61(2004).
RN [2]
RP X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) IN COMPLEX WITH
RP S-ADENOSYL-L-METHIONINE, AND SUBUNIT.
RA Chang C., Evdokimova E., Liu F., Savchenko A., Edwards A., Joachimiak A.;
RT "Crystal structure of YaeB-like protein from Rhodopseudomonas palustris.";
RL Submitted (AUG-2010) to the PDB data bank.
CC -!- SUBUNIT: Homodimer. {ECO:0000305|Ref.2}.
CC -!- SIMILARITY: Belongs to the tRNA methyltransferase O family.
CC {ECO:0000305}.
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DR EMBL; BX572593; CAE25596.1; -; Genomic_DNA.
DR RefSeq; WP_011155720.1; NC_005296.1.
DR PDB; 3OKX; X-ray; 1.80 A; A/B=1-167.
DR PDBsum; 3OKX; -.
DR AlphaFoldDB; Q6NDF6; -.
DR SMR; Q6NDF6; -.
DR STRING; 258594.RPA0152; -.
DR PRIDE; Q6NDF6; -.
DR EnsemblBacteria; CAE25596; CAE25596; RPA0152.
DR GeneID; 66891154; -.
DR KEGG; rpa:RPA0152; -.
DR eggNOG; COG1720; Bacteria.
DR HOGENOM; CLU_013458_2_0_5; -.
DR OMA; FYWLHRS; -.
DR PhylomeDB; Q6NDF6; -.
DR BioCyc; RPAL258594:TX73_RS00775-MON; -.
DR EvolutionaryTrace; Q6NDF6; -.
DR Proteomes; UP000001426; Chromosome.
DR CDD; cd09281; UPF0066; 1.
DR Gene3D; 2.40.30.70; -; 1.
DR InterPro; IPR023370; TrmO-like_N.
DR InterPro; IPR040372; YaeB-like.
DR InterPro; IPR036413; YaeB-like_sf.
DR InterPro; IPR036414; YaeB_N_sf.
DR PANTHER; PTHR12818; PTHR12818; 1.
DR Pfam; PF01980; TrmO; 1.
DR SUPFAM; SSF118196; SSF118196; 1.
DR PROSITE; PS51668; TSAA_2; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome; S-adenosyl-L-methionine.
FT CHAIN 1..167
FT /note="S-adenosyl-L-methionine-binding protein RPA0152"
FT /id="PRO_0000421924"
FT DOMAIN 24..154
FT /note="TsaA-like"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01003"
FT REGION 148..167
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 41..43
FT /ligand="S-adenosyl-L-methionine"
FT /ligand_id="ChEBI:CHEBI:59789"
FT /evidence="ECO:0000269|Ref.2"
FT BINDING 79..80
FT /ligand="S-adenosyl-L-methionine"
FT /ligand_id="ChEBI:CHEBI:59789"
FT /evidence="ECO:0000269|Ref.2"
FT BINDING 103
FT /ligand="S-adenosyl-L-methionine"
FT /ligand_id="ChEBI:CHEBI:59789"
FT /evidence="ECO:0000269|Ref.2"
FT BINDING 113
FT /ligand="S-adenosyl-L-methionine"
FT /ligand_id="ChEBI:CHEBI:59789"
FT /evidence="ECO:0000269|Ref.2"
FT BINDING 132..137
FT /ligand="S-adenosyl-L-methionine"
FT /ligand_id="ChEBI:CHEBI:59789"
FT /evidence="ECO:0000269|Ref.2"
FT STRAND 21..24
FT /evidence="ECO:0007829|PDB:3OKX"
FT STRAND 28..31
FT /evidence="ECO:0007829|PDB:3OKX"
FT HELIX 37..39
FT /evidence="ECO:0007829|PDB:3OKX"
FT STRAND 51..55
FT /evidence="ECO:0007829|PDB:3OKX"
FT HELIX 57..63
FT /evidence="ECO:0007829|PDB:3OKX"
FT STRAND 71..77
FT /evidence="ECO:0007829|PDB:3OKX"
FT STRAND 85..88
FT /evidence="ECO:0007829|PDB:3OKX"
FT HELIX 99..101
FT /evidence="ECO:0007829|PDB:3OKX"
FT STRAND 107..109
FT /evidence="ECO:0007829|PDB:3OKX"
FT STRAND 111..122
FT /evidence="ECO:0007829|PDB:3OKX"
FT STRAND 125..129
FT /evidence="ECO:0007829|PDB:3OKX"
FT STRAND 137..144
FT /evidence="ECO:0007829|PDB:3OKX"
FT HELIX 146..148
FT /evidence="ECO:0007829|PDB:3OKX"
FT HELIX 157..160
FT /evidence="ECO:0007829|PDB:3OKX"
SQ SEQUENCE 167 AA; 18611 MW; 4FC18E1F8737287C CRC64;
MDATDDIRAG ELASDWSGSP DAGVVFIGRI HTPWNRLKEC PRHGRADGPV CRIEVFETWL
PALAGIDDGT LLEVFYWLHR SRRDLLLQCP RNDGDARGTF SIRSPLRPNP IGTSIARVDR
RDGANLFIRG LDCLDGTPLV DLKPDRAEFM PLAPPKPGDF QVGEPRR