Y1540_ARATH
ID Y1540_ARATH Reviewed; 148 AA.
AC Q9XI29; A8MRG0; Q3EDC0;
DT 18-MAR-2008, integrated into UniProtKB/Swiss-Prot.
DT 18-MAR-2008, sequence version 2.
DT 25-MAY-2022, entry version 109.
DE RecName: Full=Uncharacterized protein At1g15400;
GN OrderedLocusNames=At1g15400; ORFNames=F9L1.35;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3).
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3).
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC STRAIN=cv. La-0;
RX PubMed=14506206; DOI=10.1074/mcp.t300006-mcp200;
RA Nuehse T.S., Stensballe A., Jensen O.N., Peck S.C.;
RT "Large-scale analysis of in vivo phosphorylated membrane proteins by
RT immobilized metal ion affinity chromatography and mass spectrometry.";
RL Mol. Cell. Proteomics 2:1234-1243(2003).
RN [7]
RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=15308754; DOI=10.1105/tpc.104.023150;
RA Nuehse T.S., Stensballe A., Jensen O.N., Peck S.C.;
RT "Phosphoproteomics of the Arabidopsis plasma membrane and a new
RT phosphorylation site database.";
RL Plant Cell 16:2394-2405(2004).
RN [8]
RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-100 AND SER-107, AND
RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=19376835; DOI=10.1104/pp.109.138677;
RA Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A.,
RA Grossmann J., Gruissem W., Baginsky S.;
RT "Large-scale Arabidopsis phosphoproteome profiling reveals novel
RT chloroplast kinase substrates and phosphorylation networks.";
RL Plant Physiol. 150:889-903(2009).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=3;
CC Name=1;
CC IsoId=Q9XI29-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9XI29-2; Sequence=VSP_032662, VSP_032663;
CC Name=3;
CC IsoId=Q9XI29-3; Sequence=VSP_032664;
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DR EMBL; AC007591; AAD39668.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE29316.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE29317.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE29318.1; -; Genomic_DNA.
DR EMBL; AF336927; AAG54008.1; -; mRNA.
DR EMBL; AY085171; AAM61724.1; -; mRNA.
DR EMBL; AK228431; BAF00363.1; -; mRNA.
DR PIR; F86288; F86288.
DR RefSeq; NP_001077541.1; NM_001084072.1. [Q9XI29-1]
DR RefSeq; NP_563975.2; NM_101409.3. [Q9XI29-2]
DR RefSeq; NP_849670.1; NM_179339.2. [Q9XI29-3]
DR AlphaFoldDB; Q9XI29; -.
DR iPTMnet; Q9XI29; -.
DR SwissPalm; Q9XI29; -.
DR PaxDb; Q9XI29; -.
DR PRIDE; Q9XI29; -.
DR ProteomicsDB; 242421; -. [Q9XI29-1]
DR EnsemblPlants; AT1G15400.1; AT1G15400.1; AT1G15400. [Q9XI29-2]
DR EnsemblPlants; AT1G15400.2; AT1G15400.2; AT1G15400. [Q9XI29-3]
DR EnsemblPlants; AT1G15400.3; AT1G15400.3; AT1G15400. [Q9XI29-1]
DR GeneID; 838110; -.
DR Gramene; AT1G15400.1; AT1G15400.1; AT1G15400. [Q9XI29-2]
DR Gramene; AT1G15400.2; AT1G15400.2; AT1G15400. [Q9XI29-3]
DR Gramene; AT1G15400.3; AT1G15400.3; AT1G15400. [Q9XI29-1]
DR KEGG; ath:AT1G15400; -.
DR Araport; AT1G15400; -.
DR TAIR; locus:2037738; AT1G15400.
DR eggNOG; ENOG502S5HJ; Eukaryota.
DR HOGENOM; CLU_123547_0_0_1; -.
DR InParanoid; Q9XI29; -.
DR OMA; ARACLIG; -.
DR OrthoDB; 1512113at2759; -.
DR PhylomeDB; Q9XI29; -.
DR PRO; PR:Q9XI29; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9XI29; baseline and differential.
DR Genevisible; Q9XI29; AT.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0005886; C:plasma membrane; IDA:TAIR.
DR InterPro; IPR031421; DUF4666.
DR PANTHER; PTHR33730; PTHR33730; 1.
DR Pfam; PF15697; DUF4666; 1.
PE 1: Evidence at protein level;
KW Alternative splicing; Phosphoprotein; Reference proteome.
FT CHAIN 1..148
FT /note="Uncharacterized protein At1g15400"
FT /id="PRO_0000326464"
FT REGION 1..148
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..15
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 33..69
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 126..148
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOD_RES 100
FT /note="Phosphoserine"
FT /evidence="ECO:0007744|PubMed:19376835"
FT MOD_RES 107
FT /note="Phosphoserine"
FT /evidence="ECO:0007744|PubMed:19376835"
FT VAR_SEQ 141..148
FT /note="Missing (in isoform 3)"
FT /evidence="ECO:0000303|PubMed:14593172, ECO:0000303|Ref.4,
FT ECO:0000303|Ref.5"
FT /id="VSP_032664"
FT VAR_SEQ 141..145
FT /note="RRIVT -> EGGGS (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_032662"
FT VAR_SEQ 146..148
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_032663"
SQ SEQUENCE 148 AA; 16339 MW; DC1D315AC41EE377 CRC64;
MEGLQRSTIS FRRQGSSGIV FDDRLIAELN KSGNNEQKDE SQRDEQPKPM SESSEQVKPI
DEKDKLRPIK TGGGAPGGIE RSRSNGGGAQ RHHRTTGRVS PAVDPPSPRI SSCGCCSAFG
KNPPGKKVNP RKRPPKRRSR RRIVTKKR
