ID   CAPSD_LOLV              Reviewed;         293 AA.
AC   B1PS80;
DT   08-FEB-2011, integrated into UniProtKB/Swiss-Prot.
DT   29-APR-2008, sequence version 1.
DT   29-SEP-2021, entry version 36.
DE   RecName: Full=Capsid protein;
DE            Short=CP;
DE   AltName: Full=Coat protein;
GN   Name=ORF5;
OS   Lolium latent virus (isolate Lolium/USA/US1/-) (LoLV).
OC   Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
OC   Tymovirales; Alphaflexiviridae; Lolavirus.
OX   NCBI_TaxID=686945;
OH   NCBI_TaxID=480553; Lolium multiflorum x Lolium perenne.
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RA   Vaira A.M.V., Maroon-Lango C.J., Hammond J.;
RT   "Molecular characterization of Lolium latent virus, proposed type member of
RT   a new genus in the family Flexiviridae.";
RL   Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   SUBCELLULAR LOCATION, AND INTERACTION WITH HOST NBANKR.
RX   PubMed=29557771; DOI=10.1099/jgv.0.001043;
RA   Vaira A.M., Lim H.S., Bauchan G., Gulbronson C.J., Miozzi L., Vinals N.,
RA   Natilla A., Hammond J.;
RT   "The interaction of Lolium latent virus major coat protein with ankyrin
RT   repeat protein NbANKr redirects it to chloroplasts and modulates virus
RT   infection.";
RL   J. Gen. Virol. 99:730-742(2018).
CC   -!- FUNCTION: Required for genome encapsidation. Forms ribonucleoprotein
CC       complexes along with TGB1 helicase and viral RNA (By similarity).
CC       {ECO:0000250}.
CC   -!- SUBUNIT: Interacts with host NbANKr; this interaction targets the
CC       capsid protein to the host chloroplast. {ECO:0000269|PubMed:29557771}.
CC   -!- SUBCELLULAR LOCATION: Virion {ECO:0000305}. Host chloroplast envelope
CC       {ECO:0000269|PubMed:29557771}.
CC   -!- SIMILARITY: Belongs to the potexvirus capsid protein family.
CC       {ECO:0000305}.
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DR   EMBL; EU489641; ACA53378.1; -; Genomic_RNA.
DR   RefSeq; YP_001718503.1; NC_010434.1.
DR   SMR; B1PS80; -.
DR   GeneID; 6000101; -.
DR   KEGG; vg:6000101; -.
DR   Proteomes; UP000008689; Genome.
DR   GO; GO:0019029; C:helical viral capsid; IEA:UniProtKB-KW.
DR   GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR   InterPro; IPR000052; Pltvir_coat.
DR   Pfam; PF00286; Flexi_CP; 1.
DR   PRINTS; PR00232; POTXCARLCOAT.
PE   1: Evidence at protein level;
KW   Capsid protein; Helical capsid protein; Host-virus interaction;
KW   Reference proteome; Ribonucleoprotein; Virion.
FT   CHAIN           1..293
FT                   /note="Capsid protein"
FT                   /id="PRO_0000404269"
FT   REGION          1..49
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        14..41
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   293 AA;  31635 MW;  9FA092FAA311DDFB CRC64;
     MSESKAETPS KSAEKGVASL STSAPPSSTT PTAQAKQTPP PVATTARPMA SRLPRTIAAE
     GGGTEKKQSH LAEDRIAQYL PKQDAVDHSN LAALLQPFTE ASYEREFDVK VNGIASKAEL
     TAVAETWASR LNVPKENSAV LAQEIAIHCY HNGSSEQTDF NLKSSQVAGL NLEAAVGVIK
     EILTLRQFAA YYATFVWNWG IKNEIPPANW VAKGYTDETK YAAFDTFSYV GSPLGLRITP
     TRKPTNNEYM AASVNAREKI IQSRGKGMVT NSPMFSDGTT HQGIPLHPKL PLS