Y1591_ARATH
ID Y1591_ARATH Reviewed; 1210 AA.
AC F4IAE9; Q93ZM5; Q9MA34;
DT 22-FEB-2012, integrated into UniProtKB/Swiss-Prot.
DT 28-JUN-2011, sequence version 1.
DT 03-AUG-2022, entry version 71.
DE RecName: Full=ATPase family AAA domain-containing protein At1g05910;
GN OrderedLocusNames=At1g05910; ORFNames=T20M3.19;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- SIMILARITY: Belongs to the AAA ATPase family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF29398.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC009999; AAF29398.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE27917.1; -; Genomic_DNA.
DR EMBL; AY056785; AAL10476.1; -; mRNA.
DR EMBL; BT002728; AAO11644.1; -; mRNA.
DR PIR; B86194; B86194.
DR RefSeq; NP_563753.1; NM_100472.2.
DR AlphaFoldDB; F4IAE9; -.
DR SMR; F4IAE9; -.
DR STRING; 3702.AT1G05910.1; -.
DR iPTMnet; F4IAE9; -.
DR PaxDb; F4IAE9; -.
DR PRIDE; F4IAE9; -.
DR ProteomicsDB; 242985; -.
DR EnsemblPlants; AT1G05910.1; AT1G05910.1; AT1G05910.
DR GeneID; 837101; -.
DR Gramene; AT1G05910.1; AT1G05910.1; AT1G05910.
DR KEGG; ath:AT1G05910; -.
DR Araport; AT1G05910; -.
DR TAIR; locus:2198748; AT1G05910.
DR eggNOG; KOG0732; Eukaryota.
DR HOGENOM; CLU_007111_0_0_1; -.
DR InParanoid; F4IAE9; -.
DR OMA; RPKYFGR; -.
DR OrthoDB; 443983at2759; -.
DR PRO; PR:F4IAE9; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; F4IAE9; baseline and differential.
DR Genevisible; F4IAE9; AT.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IBA:GO_Central.
DR GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
DR GO; GO:0042393; F:histone binding; IDA:TAIR.
DR GO; GO:0080111; P:DNA demethylation; IMP:TAIR.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 1.20.920.10; -; 1.
DR Gene3D; 3.40.50.300; -; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR041569; AAA_lid_3.
DR InterPro; IPR045199; ATAD2-like.
DR InterPro; IPR003959; ATPase_AAA_core.
DR InterPro; IPR003960; ATPase_AAA_CS.
DR InterPro; IPR001487; Bromodomain.
DR InterPro; IPR036427; Bromodomain-like_sf.
DR InterPro; IPR027417; P-loop_NTPase.
DR PANTHER; PTHR23069; PTHR23069; 1.
DR Pfam; PF00004; AAA; 1.
DR Pfam; PF17862; AAA_lid_3; 1.
DR Pfam; PF00439; Bromodomain; 1.
DR PRINTS; PR00503; BROMODOMAIN.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00297; BROMO; 1.
DR SUPFAM; SSF47370; SSF47370; 1.
DR SUPFAM; SSF52540; SSF52540; 2.
DR PROSITE; PS00674; AAA; 1.
DR PROSITE; PS00633; BROMODOMAIN_1; 1.
DR PROSITE; PS50014; BROMODOMAIN_2; 1.
PE 2: Evidence at transcript level;
KW ATP-binding; Bromodomain; Nucleotide-binding; Reference proteome.
FT CHAIN 1..1210
FT /note="ATPase family AAA domain-containing protein
FT At1g05910"
FT /id="PRO_0000415737"
FT DOMAIN 910..980
FT /note="Bromo"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00035"
FT REGION 1..32
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 63..291
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 856..883
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1057..1151
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 127..150
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 170..224
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 225..244
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 863..877
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1057..1071
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1075..1108
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 422..429
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255"
FT CONFLICT 515
FT /note="D -> N (in Ref. 3; AAO11644/AAL10476)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 1210 AA; 133784 MW; A71F96B291BF677E CRC64;
MHPKRSSQGD GSVTKPVRTS DRLRRRPKLH GRSYLYYSSP NMLHNRKRNT KTRTAASQIA
KMLHKGNRPA RASNAAPIAS DLRRSTRKRR ISVNLEDYTD SSGAEDEDMM SPAYRTLRRR
VHKNFSTSKS RKDMDAELAP RREGLRPRRS TTIANKRLKT ESGADQDTSE EKDGQDETEN
GNELDDADDG ENEVEAEDEG NGEDEGDGED EGEEDGDDDE EGDEEQEGRK RYDLRNRAEV
RRMPTGEINK QQQPRSPRRV LHQGMGTRVG RDGRRGGSRP HKRHRFTRTD DSDDSLLVDE
LDQGPAIPWA RGGNRSGAPW LFGGLDTYGS SSLGLNVGAS GWGHQSDGLA ALTSGVQTAG
PSSKGGADIQ PLQINEDINF DDIGGLSEYI NDLKEMVFFP LLYPEFFASY SITPPRGVLL
CGPPGTGKTL IARALACAAS KAGQKVSFYM RKGADVLSKW VGEAERQLKL LFEEAQRNQP
SIIFFDEIDG LAPVRSSKQE QIHNSIVSTL LALMDGLDSR GQVVLIGATN RVDAIDGALR
RPGRFDREFN FSLPGCEARA EILDIHTRKW KHPPTRELKE ELAATCVGYC GADLKALCTE
AAIRAFREKY PQVYTSDDKY AIDVGLVNVE KSHFVEAMSA ITPAAHRGSV VQSRPLSPVV
LPCLHRHLLE SMSLISDIFP SSATSSELTK LSILTFGSAI PLVYRPRLLL LGGEGVGLDH
LGPAILHELE KFPIHSLGLP SLLSDPGAKT PEEALVHIFS EARRTTPSIL YIPMFNNWWE
NAHEQLRAVF LTLLEELPSN LPILLLATSY GELSDMEEQS VFDNRSVYTV DKPSSEDRSL
FFDRLIEAAL SVISGLNGKP DGPQPLPELP KVPKEPTGPK PAEVKAKVEA EQHALRRLRM
CLRDVCNRIL YDKRFSAFHF PVTDEDAPNY RSIIQIPMDT ATLLQRVDTG QYLTCTPFLQ
DVDLIVRNAK AYNGDDYAGA RIVSRAYELR DVVHGMLSQM DPALLTYCDK IAAEGGPSLI
PDDLSGSILG LAPVVQMGTV TRTSARLRNV QPEVNLDRDY EGLKKPKKTT DAVSIDSAAD
KSQNQDSGQE MPSPDAANPQ SAAPSPTDGD REDQSEPPSK EASAEDMSGD SCKGPAAKSD
KEISSRTESV KGVFMERTDN YSIPQMERLY TRIMKGVLET LDKGLRDDDN NPKHSILRFL
SEFAQHQANF
