Y1648_ARATH
ID Y1648_ARATH Reviewed; 225 AA.
AC Q6NLC8; Q0WSY0; Q9C708;
DT 02-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 93.
DE RecName: Full=Uncharacterized protein At1g66480;
GN OrderedLocusNames=At1g66480; ORFNames=F28G11.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RA Shinn P., Chen H., Cheuk R.F., Kim C.J., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOROFM 2).
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q6NLC8-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q6NLC8-2; Sequence=VSP_028262, VSP_028263;
CC -!- SEQUENCE CAUTION:
CC Sequence=AAG51153.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC074025; AAG51153.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE34514.1; -; Genomic_DNA.
DR EMBL; BT011775; AAS65946.1; -; mRNA.
DR EMBL; BT012406; AAS92322.1; -; mRNA.
DR EMBL; AK227786; BAE99768.1; -; mRNA.
DR RefSeq; NP_176821.2; NM_105319.4. [Q6NLC8-1]
DR AlphaFoldDB; Q6NLC8; -.
DR BioGRID; 28187; 2.
DR IntAct; Q6NLC8; 1.
DR STRING; 3702.AT1G66480.1; -.
DR iPTMnet; Q6NLC8; -.
DR MetOSite; Q6NLC8; -.
DR PaxDb; Q6NLC8; -.
DR PRIDE; Q6NLC8; -.
DR ProteomicsDB; 242799; -. [Q6NLC8-1]
DR EnsemblPlants; AT1G66480.1; AT1G66480.1; AT1G66480. [Q6NLC8-1]
DR GeneID; 842966; -.
DR Gramene; AT1G66480.1; AT1G66480.1; AT1G66480. [Q6NLC8-1]
DR KEGG; ath:AT1G66480; -.
DR Araport; AT1G66480; -.
DR TAIR; locus:2028942; AT1G66480.
DR eggNOG; ENOG502RP95; Eukaryota.
DR HOGENOM; CLU_083135_1_0_1; -.
DR InParanoid; Q6NLC8; -.
DR OMA; PMENEVL; -.
DR OrthoDB; 1249368at2759; -.
DR PhylomeDB; Q6NLC8; -.
DR PRO; PR:Q6NLC8; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q6NLC8; baseline and differential.
DR Genevisible; Q6NLC8; AT.
DR GO; GO:0009620; P:response to fungus; IEP:TAIR.
DR InterPro; IPR025322; PADRE_dom.
DR Pfam; PF14009; PADRE; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome.
FT CHAIN 1..225
FT /note="Uncharacterized protein At1g66480"
FT /id="PRO_0000305185"
FT VAR_SEQ 204..210
FT /note="KQVSFAG -> VILVFLL (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_028262"
FT VAR_SEQ 211..225
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_028263"
FT CONFLICT 97
FT /note="M -> L (in Ref. 4; BAE99768)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 225 AA; 24731 MW; 01BC5743A72637E5 CRC64;
MGNSITVKRK RAKVMKIDGE TFRIKTPVTA REVTADYPGY VLLDSQAVKH FGVRSKPLEP
NQTLKPKKTY FLVELPKLPP ETTAVDTENK LPYRRVMSGI HVGAKERLDM LMLSRRTVSD
VTIGRSDGGD GFGPELGPGH TSVRLRLPRS QITKLMEENN NDASAIAEKI LGIYMERSGE
LGGGRGGVDG RRELGSGEIK AREKQVSFAG EGGRELPVLW SRSGK
