CAPSD_RMVHR
ID CAPSD_RMVHR Reviewed; 157 AA.
AC P03580; Q98634;
DT 21-JUL-1986, integrated into UniProtKB/Swiss-Prot.
DT 23-JAN-2007, sequence version 3.
DT 02-JUN-2021, entry version 90.
DE RecName: Full=Capsid protein;
DE AltName: Full=Coat protein;
GN Name=CP;
OS Ribgrass mosaic virus (strain Hr) (RMV) (TMV strain Holmes ribgrass).
OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
OC Martellivirales; Virgaviridae; Tobamovirus.
OX NCBI_TaxID=12248;
OH NCBI_TaxID=49450; Digitalis lanata (Grecian foxglove).
OH NCBI_TaxID=75806; Eutrema japonicum (Wasabi plant) (Eutrema wasabi).
OH NCBI_TaxID=4097; Nicotiana tabacum (Common tobacco).
OH NCBI_TaxID=39414; Plantago lanceolata (English plantain) (Ribwort plantain).
OH NCBI_TaxID=29818; Plantago major (Common plantain).
OH NCBI_TaxID=65951; Rorippa amphibia (Great yellow-cress) (Nasturtium amphibium).
OH NCBI_TaxID=65952; Rorippa sylvestris (Creeping yellow-cress) (Nasturtium sylvestre).
OH NCBI_TaxID=52853; Silene latifolia subsp. alba (White campion) (Lychnis alba).
OH NCBI_TaxID=203579; Sisymbrium loeselii.
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RA Wang H., Culver J.N., Stubbs G.;
RT "Coat protein open reading frame of ribgrass mosaic virus.";
RL Submitted (SEP-1996) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP PROTEIN SEQUENCE OF 2-157.
RA Funatsu G., Funatsu M.;
RT "Chemical studies on proteins from two tobacco mosaic virus strains.";
RL Nihon Shokubutsu Byori Gakkaiho 43:1-9(1968).
RN [3]
RP PROTEIN SEQUENCE OF 2-62, AND ACETYLATION AT SER-2.
RX PubMed=4390042;
RA Jauregui-Adell J., Hindennach I., Wittmann H.G.;
RT "Primary protein structure of strains of the tobacco mosaic virus. V. Amino
RT acid sequence (1-61) of the protein of tobacco mosaic virus strain Holmes
RT rib grass.";
RL Z. Naturforsch. B 24:870-877(1969).
RN [4]
RP PROTEIN SEQUENCE OF 63-157.
RX PubMed=4390043;
RA Wittmann H.G., Hindennach I., Wittmann-Liebold B.;
RT "Part VI: amino-acid sequence (positions 62-156) of the protein of strain
RT Holmes rib grass of tobacco mosaic virus.";
RL Z. Naturforsch. B 24:877-885(1969).
RN [5]
RP X-RAY CRYSTALLOGRAPHY (2.9 ANGSTROMS).
RX PubMed=9223640; DOI=10.1006/jmbi.1997.1048;
RA Wang H., Culver J.N., Stubbs G.;
RT "Structure of ribgrass mosaic virus at 2.9-A resolution: evolution and
RT taxonomy of tobamoviruses.";
RL J. Mol. Biol. 269:769-779(1997).
CC -!- FUNCTION: Capsid protein self-assembles to form rod-shaped virions
CC about 18 nm in diameter with a central canal enclosing the viral
CC genomic RNA.
CC -!- SUBCELLULAR LOCATION: Virion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the virgaviridae capsid protein family.
CC {ECO:0000305}.
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DR EMBL; U69271; AAB08579.1; -; Genomic_RNA.
DR PDB; 1RMV; Fiber; 2.90 A; A=2-157.
DR PDBsum; 1RMV; -.
DR SMR; P03580; -.
DR iPTMnet; P03580; -.
DR EvolutionaryTrace; P03580; -.
DR GO; GO:0019029; C:helical viral capsid; IEA:UniProtKB-KW.
DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR Gene3D; 1.20.120.70; -; 1.
DR InterPro; IPR001337; TMV-like_coat.
DR InterPro; IPR036417; TMV-like_coat_sf.
DR Pfam; PF00721; TMV_coat; 1.
DR SUPFAM; SSF47195; SSF47195; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Acetylation; Capsid protein; Direct protein sequencing;
KW Helical capsid protein; Virion.
FT INIT_MET 1
FT /note="Removed; by host"
FT /evidence="ECO:0000269|PubMed:4390042, ECO:0000269|Ref.2"
FT CHAIN 2..157
FT /note="Capsid protein"
FT /id="PRO_0000144943"
FT MOD_RES 2
FT /note="N-acetylserine; by host"
FT /evidence="ECO:0000269|PubMed:4390042"
FT CONFLICT 96
FT /note="E -> Q (in Ref. 4; AA sequence)"
FT /evidence="ECO:0000305"
FT CONFLICT 100
FT /note="E -> Q (in Ref. 4; AA sequence)"
FT /evidence="ECO:0000305"
FT CONFLICT 107
FT /note="E -> Q (in Ref. 4; AA sequence and 2; AA sequence)"
FT /evidence="ECO:0000305"
FT CONFLICT 110
FT /note="N -> D (in Ref. 2; AA sequence)"
FT /evidence="ECO:0000305"
FT CONFLICT 136..137
FT /note="GH -> HG (in Ref. 4; AA sequence and 2; AA
FT sequence)"
FT /evidence="ECO:0000305"
FT CONFLICT 141
FT /note="N -> D (in Ref. 2; AA sequence)"
FT /evidence="ECO:0000305"
FT CONFLICT 144
FT /note="E -> Q (in Ref. 2; AA sequence)"
FT /evidence="ECO:0000305"
FT HELIX 8..10
FT /evidence="ECO:0007829|PDB:1RMV"
FT STRAND 12..16
FT /evidence="ECO:0007829|PDB:1RMV"
FT HELIX 21..32
FT /evidence="ECO:0007829|PDB:1RMV"
FT HELIX 40..52
FT /evidence="ECO:0007829|PDB:1RMV"
FT STRAND 59..61
FT /evidence="ECO:0007829|PDB:1RMV"
FT HELIX 77..87
FT /evidence="ECO:0007829|PDB:1RMV"
FT STRAND 97..101
FT /evidence="ECO:0007829|PDB:1RMV"
FT STRAND 106..108
FT /evidence="ECO:0007829|PDB:1RMV"
FT HELIX 113..135
FT /evidence="ECO:0007829|PDB:1RMV"
FT STRAND 137..140
FT /evidence="ECO:0007829|PDB:1RMV"
FT TURN 142..144
FT /evidence="ECO:0007829|PDB:1RMV"
SQ SEQUENCE 157 AA; 17645 MW; E4E266CFE44D095D CRC64;
MSYNITNSNQ YQYFAAVWAE PTPMLNQCVS ALSQSYQTQA GRDTVRQQFA NLLSTIVAPN
QRFPDTGFRV YVNSAVIKPL YEALMKSFDT RNRIIETEEE SRPSASEVAN ATQRVDDATV
AIRSQIQLLL NELSNGHGYM NRAEFEAILP WTTAPAT
