CAPSD_RRSVT
ID CAPSD_RRSVT Reviewed; 1173 AA.
AC O56044;
DT 11-JAN-2011, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-1998, sequence version 1.
DT 23-FEB-2022, entry version 45.
DE RecName: Full=Major inner capsid protein VP3;
DE AltName: Full=Major core capsid protein VP3;
OS Rice ragged stunt virus (isolate Thailand) (RRSV).
OC Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes;
OC Reovirales; Reoviridae; Spinareovirinae; Oryzavirus.
OX NCBI_TaxID=649603;
OH NCBI_TaxID=4534; Oryza latifolia.
OH NCBI_TaxID=4536; Oryza nivara (Indian wild rice) (Oryza sativa f. spontanea).
OH NCBI_TaxID=4529; Oryza rufipogon (Brownbeard rice) (Asian wild rice).
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RA Upadhyaya N.M., Li Z., Ramm K., Yang M., Gellatly J.A., Kositratana W.,
RA Gerlach W.L., Waterhouse P.M.;
RT "Rice ragged stunt oryzavirus:complete sequence and genome organization.";
RL Submitted (AUG-1997) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Capsid protein self-assembles to form an icosahedral capsid
CC with a pseudo T=2 symmetry, about 70 nm in diameter, and consisting of
CC 120 capsid proteins. The capsid encapsulates the genomic RNA (By
CC similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Virion {ECO:0000305}.
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DR EMBL; AF020336; AAC04674.1; -; Genomic_RNA.
DR PIR; T08610; T08610.
DR RefSeq; NP_620516.1; NC_003751.1.
DR SMR; O56044; -.
DR PRIDE; O56044; -.
DR GeneID; 991197; -.
DR KEGG; vg:991197; -.
DR Proteomes; UP000000348; Genome.
DR GO; GO:0039616; C:T=2 icosahedral viral capsid; IEA:UniProtKB-KW.
DR GO; GO:0039625; C:viral inner capsid; IEA:UniProtKB-KW.
PE 3: Inferred from homology;
KW Capsid protein; Inner capsid protein; Reference proteome;
KW T=2 icosahedral capsid protein; Virion.
FT CHAIN 1..1173
FT /note="Major inner capsid protein VP3"
FT /id="PRO_0000403631"
FT REGION 1..53
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 27..53
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1173 AA; 130853 MW; 9E863FAC66A8EB3C CRC64;
MSNLPKPASH FEPEKNVDDK GNVTGSAPPV SKDTPTQQAS VSLPNQEEPT QQTLVTTELP
TKPDYNDLLL KASDERLLLV KEAKPQTLRF YASPTGLTAS GFSIVTSPTS SYEQHAIDIF
PYNCPVDKIV PAFTLEQIKI TNDVLSSAQQ SYLSRIPHDT SLVKLNEIEV VTGGSRDLFS
LGTGYVMVVP NAEFFEGANL KFVYGVPMAD IIFSKLTSQS AADYAFLDRS RIASGFIMFA
LHFALRTNVN LVVTKDNSAR FASELSYSRP MSFVQGKKIV LPVQPHVCFA EGNSLMRYLD
TALEGKYTQG VTYKYGRERI ITETKEGGPI TEITYLNIDN VTAQALGITA HVIGIDRYRE
DNVKRALLAY SLSGSTVDLM QSDESERMFG RMLSPQQELS YLLVGAALSQ DVYKTILRAN
LDAFMMFGTV MPSLSDSLAK IPADAGNQQI ISLIRERQSV SGFENAMEYL AMQVTPPLIW
PCVISREVNV TGLSLLIMLL EYILFFIFYP SLAKKCGAGL CNNFYKLVFA LSNSEWSQFV
TRVGYDGTLG NSIPITDEDY WSNARRPALF TTDLSQFRLL GLIQRLIAPI GEHREHVKAQ
AAEFPRLKAR TEYWNPYPNP GAQHVEQTIF KARLLQAFDE TLTLVKDLNQ TGQLVSKTLM
AGVAKVFNTC KIKLRYHGVG FGRDIGMPLA YLRDRKINFY HDYDGRLDTP FPNQMMLVSA
SQSPHDHKIP IELRRKGQIV LETGVVWTLV LGLQFPSHQF DEDMTNDPIC KFRAPSPGEE
LGKDDTIIAM CANACVPFSI AAGIISESYA DGGMKEIKEL LSGSLSSTEF RNLISCIQTA
MQGSGFNVGR NRDVFRQNET VDLRFIEPKV RYVENELTII APTPQDPPII RGDLQLIPEG
LMPRFRLGLT AIADSSSEYS RLRKGLYLAR CEVDVEAPNN ALPLDLRDYV EVEYSHDLFQ
VRRIQTKQAL GIFYQGEFYY RPALVPKMLI VVNTSEEMEP SYQEFFMQCL EERRIVIKLP
KMYFLSRIVC THSIQRPDER DAVLGLLAVR NDQIPLVTFY DTEQVDPTIQ FDGLASGSKS
KFIWPISSID QNVVVRALGA SGSTAPIGFA APTDSMCDSG SIDDVGNLTT GAGVLKDPRV
ISLTNGVINY TERANLTGRV LYRYRPAYAL DSY