CAPSD_SHMV
ID CAPSD_SHMV Reviewed; 163 AA.
AC P03581;
DT 21-JUL-1986, integrated into UniProtKB/Swiss-Prot.
DT 23-JAN-2007, sequence version 2.
DT 02-DEC-2020, entry version 85.
DE RecName: Full=Capsid protein;
DE AltName: Full=Coat protein;
GN Name=CP;
OS Sunn-hemp mosaic virus (SHMV) (TMV strain cowpea).
OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
OC Martellivirales; Virgaviridae; Tobamovirus.
OX NCBI_TaxID=12240;
OH NCBI_TaxID=3829; Crotalaria juncea (Sunn hemp).
OH NCBI_TaxID=35936; Lablab purpureus (Hyacinth bean) (Dolichos lablab).
OH NCBI_TaxID=40336; Mucuna.
OH NCBI_TaxID=3917; Vigna unguiculata (Cowpea).
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RX PubMed=6950195; DOI=10.1007/bf00271189;
RA Meshi T., Ohno T., Iba H., Okada Y.;
RT "Nucleotide sequence of a cloned cDNA copy of TMV (cowpea strain) RNA,
RT including the assembly origin, the coat protein cistron, and the 3' non-
RT coding region.";
RL Mol. Gen. Genet. 184:20-25(1981).
RN [2]
RP PROTEIN SEQUENCE OF 2-163, AND ACETYLATION AT ALA-2.
RX PubMed=1138919; DOI=10.1016/0005-2795(75)90211-1;
RA Rees M.W., Short M.N.;
RT "The amino acid sequence of the cowpea strain of tobacco mosaic virus
RT protein.";
RL Biochim. Biophys. Acta 393:15-23(1975).
RN [3]
RP PROTEIN SEQUENCE OF TRYPTIC PEPTIDES.
RX PubMed=4441618; DOI=10.1002/bms.1200010407;
RA Rees M.W., Short M.N., Self R., Eagles J.;
RT "The amino acid sequences of the tryptic peptides of the cowpea strain of
RT tobacco mosaic virus protein.";
RL Biomed. Mass Spectrom. 1:237-251(1974).
CC -!- FUNCTION: Capsid protein self-assembles to form rod-shaped virions
CC about 18 nm in diameter with a central canal enclosing the viral
CC genomic RNA.
CC -!- SUBCELLULAR LOCATION: Virion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the virgaviridae capsid protein family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAA46587.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; J02413; AAA46587.1; ALT_INIT; Genomic_RNA.
DR PIR; A04180; VCTMCP.
DR iPTMnet; P03581; -.
DR Proteomes; UP000007218; Genome.
DR GO; GO:0019029; C:helical viral capsid; IEA:UniProtKB-KW.
DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR Gene3D; 1.20.120.70; -; 1.
DR InterPro; IPR001337; TMV-like_coat.
DR InterPro; IPR036417; TMV-like_coat_sf.
DR Pfam; PF00721; TMV_coat; 1.
DR SUPFAM; SSF47195; SSF47195; 1.
PE 1: Evidence at protein level;
KW Acetylation; Capsid protein; Direct protein sequencing;
KW Helical capsid protein; Reference proteome; Virion.
FT INIT_MET 1
FT /note="Removed; by host"
FT /evidence="ECO:0000269|PubMed:1138919"
FT CHAIN 2..163
FT /note="Capsid protein"
FT /id="PRO_0000144944"
FT MOD_RES 2
FT /note="N-acetylalanine; by host"
FT /evidence="ECO:0000269|PubMed:1138919"
FT CONFLICT 103
FT /note="N -> D (in Ref. 2; AA sequence)"
FT /evidence="ECO:0000305"
FT CONFLICT 153
FT /note="Missing (in Ref. 2; AA sequence)"
FT /evidence="ECO:0000305"
FT CONFLICT 159..160
FT /note="TP -> PT (in Ref. 2; AA sequence)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 163 AA; 18248 MW; 9B1F0CB7C43F136F CRC64;
MAYSIPTPSQ LVYFTENYAD YIPFVNRLIN ARSNSFQTQS GRDELREILI KSQVSVVSPI
SRFPAEPAYY IYLRDPSIST VYTALLQSTD TRNRVIEVEN STNVTTAEQL NAVRRTDDAS
TAIHNNLEQL LSLLTNGTGV FNRTSFESAS GLTWLVTTTP RTA
