Y1736_ARATH
ID Y1736_ARATH Reviewed; 240 AA.
AC Q9FYF7;
DT 20-JUN-2001, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 108.
DE RecName: Full=REF/SRPP-like protein At1g67360;
GN OrderedLocusNames=At1g67360; ORFNames=F1N21.18;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the REF/SRPP family. {ECO:0000305}.
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DR EMBL; AC002130; AAG00248.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE34636.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE34637.1; -; Genomic_DNA.
DR EMBL; AY050911; AAK93588.1; -; mRNA.
DR EMBL; AY091413; AAM14352.1; -; mRNA.
DR EMBL; AY136297; AAM96963.1; -; mRNA.
DR EMBL; BT000410; AAN15729.1; -; mRNA.
DR EMBL; AY085233; AAM62466.1; -; mRNA.
DR PIR; A96697; A96697.
DR RefSeq; NP_176904.1; NM_105404.3.
DR RefSeq; NP_849856.1; NM_179525.3.
DR AlphaFoldDB; Q9FYF7; -.
DR BioGRID; 28278; 1.
DR IntAct; Q9FYF7; 1.
DR STRING; 3702.AT1G67360.2; -.
DR PaxDb; Q9FYF7; -.
DR PRIDE; Q9FYF7; -.
DR ProteomicsDB; 242478; -.
DR EnsemblPlants; AT1G67360.1; AT1G67360.1; AT1G67360.
DR EnsemblPlants; AT1G67360.2; AT1G67360.2; AT1G67360.
DR GeneID; 843057; -.
DR Gramene; AT1G67360.1; AT1G67360.1; AT1G67360.
DR Gramene; AT1G67360.2; AT1G67360.2; AT1G67360.
DR KEGG; ath:AT1G67360; -.
DR Araport; AT1G67360; -.
DR TAIR; locus:2019579; AT1G67360.
DR eggNOG; ENOG502QWHP; Eukaryota.
DR HOGENOM; CLU_069928_1_0_1; -.
DR InParanoid; Q9FYF7; -.
DR OMA; PVYQKFK; -.
DR OrthoDB; 1228303at2759; -.
DR PhylomeDB; Q9FYF7; -.
DR PRO; PR:Q9FYF7; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9FYF7; baseline and differential.
DR Genevisible; Q9FYF7; AT.
DR GO; GO:0005783; C:endoplasmic reticulum; IDA:TAIR.
DR GO; GO:0005811; C:lipid droplet; IDA:TAIR.
DR GO; GO:0000325; C:plant-type vacuole; HDA:TAIR.
DR GO; GO:0071456; P:cellular response to hypoxia; HEP:TAIR.
DR GO; GO:0080186; P:developmental vegetative growth; IMP:TAIR.
DR GO; GO:0034389; P:lipid droplet organization; IMP:TAIR.
DR GO; GO:0009555; P:pollen development; IMP:TAIR.
DR GO; GO:0045927; P:positive regulation of growth; IMP:TAIR.
DR GO; GO:1902584; P:positive regulation of response to water deprivation; IMP:TAIR.
DR InterPro; IPR008802; REF.
DR PANTHER; PTHR33732; PTHR33732; 1.
DR Pfam; PF05755; REF; 1.
PE 2: Evidence at transcript level;
KW Reference proteome.
FT CHAIN 1..240
FT /note="REF/SRPP-like protein At1g67360"
FT /id="PRO_0000221064"
FT REGION 208..240
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 240 AA; 26425 MW; EA03BC17091D83A9 CRC64;
METEKKNSKE VALKHLAFVR IATIHILASV SNLYEYAKQN SGPLKSAVEK VEGAVTTVVT
PVYQKFKDVP DSLLVFLDHK VGEVSYKFDE HAPPMAKKVV NQAHVLIYKA TEKAQSFVKE
ARTGGPKAAF NYAATEYKFF VVTNSVKVWA KLNQYKPIHA MGDKALPVAA HFSSRYNDLV
TDMTNMGYSL VGYLPLVPVD DIVKAYEKED ARRKKGGDTA GKKGETTDAA DGDKSSSDSE
