CAPSD_TOML
ID CAPSD_TOML Reviewed; 159 AA.
AC P03576; P03577;
DT 21-JUL-1986, integrated into UniProtKB/Swiss-Prot.
DT 23-JAN-2007, sequence version 2.
DT 29-SEP-2021, entry version 82.
DE RecName: Full=Capsid protein;
DE AltName: Full=Coat protein;
GN Name=CP;
OS Tomato mosaic virus (strain L) (ToMV) (TMV strain tomato).
OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
OC Martellivirales; Virgaviridae; Tobamovirus.
OX NCBI_TaxID=12252;
OH NCBI_TaxID=4151; Antirrhinum majus (Garden snapdragon).
OH NCBI_TaxID=4071; Capsicum (peppers).
OH NCBI_TaxID=46246; Delphinium.
OH NCBI_TaxID=4101; Petunia.
OH NCBI_TaxID=4081; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).
OH NCBI_TaxID=13707; Tagetes (marigolds).
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RX PubMed=6549393; DOI=10.1093/oxfordjournals.jbchem.a135026;
RA Ohno T., Aoyagi M., Yamanashi Y., Saito H., Ikawa S., Meshi T., Okada Y.;
RT "Nucleotide sequence of the tobacco mosaic virus (tomato strain) genome and
RT comparison with the common strain genome.";
RL J. Biochem. 96:1915-1923(1984).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RX PubMed=6304642; DOI=10.1093/nar/11.11.3767;
RA Takamatsu N., Ohno T., Meshi T., Okada Y.;
RT "Molecular cloning and nucleotide sequence of the 30K and the coat protein
RT cistron of TMV (tomato strain) genome.";
RL Nucleic Acids Res. 11:3767-3778(1983).
CC -!- FUNCTION: Capsid protein self-assembles to form rod-shaped virions
CC about 18 nm in diameter with a central canal enclosing the viral
CC genomic RNA.
CC -!- SUBCELLULAR LOCATION: Virion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the virgaviridae capsid protein family.
CC {ECO:0000305}.
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DR EMBL; X02144; CAA26084.1; -; Genomic_RNA.
DR RefSeq; NP_078449.1; NC_002692.1.
DR SMR; P03576; -.
DR GeneID; 920840; -.
DR KEGG; vg:920840; -.
DR Proteomes; UP000001451; Genome.
DR GO; GO:0019029; C:helical viral capsid; IEA:UniProtKB-KW.
DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR Gene3D; 1.20.120.70; -; 1.
DR InterPro; IPR001337; TMV-like_coat.
DR InterPro; IPR036417; TMV-like_coat_sf.
DR Pfam; PF00721; TMV_coat; 1.
DR SUPFAM; SSF47195; SSF47195; 1.
PE 3: Inferred from homology;
KW Acetylation; Capsid protein; Helical capsid protein; Reference proteome;
KW Virion.
FT INIT_MET 1
FT /note="Removed; by host"
FT CHAIN 2..159
FT /note="Capsid protein"
FT /id="PRO_0000144950"
FT MOD_RES 2
FT /note="N-acetylserine; by host"
FT /evidence="ECO:0000250"
FT CONFLICT 31
FT /note="S -> T (in Ref. 2)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 159 AA; 17746 MW; 9C6F2BB39B3F6D18 CRC64;
MSYSITSPSQ FVFLSSVWAD PIELLNVCTN SLGNQFQTQQ ARTTVQQQFS EVWKPFPQST
VRFPGDVYKV YRYNAVLDPL ITALLGAFDT RNRIIEVENQ QSPTTAETLD ATRRVDDATV
AIRSAINNLV NELVRGTGLY NQNTFESMSG LVWTSAPAS