CAPSD_TRSV
ID CAPSD_TRSV Reviewed; 515 AA.
AC Q88894;
DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1996, sequence version 1.
DT 03-AUG-2022, entry version 90.
DE RecName: Full=Capsid protein;
DE AltName: Full=Coat protein;
DE Flags: Precursor;
OS Tobacco ringspot virus (TobRV) (TRSV).
OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
OC Picornavirales; Secoviridae; Comovirinae; Nepovirus.
OX NCBI_TaxID=12282;
OH NCBI_TaxID=22868; Anemone.
OH NCBI_TaxID=90645; Bacopa.
OH NCBI_TaxID=4072; Capsicum annuum (Capsicum pepper).
OH NCBI_TaxID=3649; Carica papaya (Papaya).
OH NCBI_TaxID=3654; Citrullus lanatus (Watermelon) (Citrullus vulgaris).
OH NCBI_TaxID=4281; Cornus.
OH NCBI_TaxID=3656; Cucumis melo (Muskmelon).
OH NCBI_TaxID=3659; Cucumis sativus (Cucumber).
OH NCBI_TaxID=66679; Daphne.
OH NCBI_TaxID=38871; Fraxinus (ash trees).
OH NCBI_TaxID=49747; Gladiolus.
OH NCBI_TaxID=3847; Glycine max (Soybean) (Glycine hispida).
OH NCBI_TaxID=16107; Hemerocallis.
OH NCBI_TaxID=23109; Hydrangea.
OH NCBI_TaxID=127142; Impatiens walleriana.
OH NCBI_TaxID=26378; Iris.
OH NCBI_TaxID=4382; Lobelia.
OH NCBI_TaxID=3869; Lupinus.
OH NCBI_TaxID=3750; Malus domestica (Apple) (Pyrus malus).
OH NCBI_TaxID=283210; Malus pumila (Paradise apple).
OH NCBI_TaxID=21819; Mentha.
OH NCBI_TaxID=39639; Narcissus pseudonarcissus (Daffodil).
OH NCBI_TaxID=4097; Nicotiana tabacum (Common tobacco).
OH NCBI_TaxID=4030; Pelargonium.
OH NCBI_TaxID=4101; Petunia.
OH NCBI_TaxID=3885; Phaseolus vulgaris (Kidney bean) (French bean).
OH NCBI_TaxID=103544; Phlox subulata.
OH NCBI_TaxID=3582; Portulaca.
OH NCBI_TaxID=42229; Prunus avium (Cherry) (Cerasus avium).
OH NCBI_TaxID=137206; Prunus incisa.
OH NCBI_TaxID=3760; Prunus persica (Peach) (Amygdalus persica).
OH NCBI_TaxID=1358727; Prunus serrula.
OH NCBI_TaxID=97321; Prunus serrulata.
OH NCBI_TaxID=132459; Pueraria montana.
OH NCBI_TaxID=23216; Rubus (bramble).
OH NCBI_TaxID=211815; Rubus plicatus.
OH NCBI_TaxID=4081; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).
OH NCBI_TaxID=4111; Solanum melongena (Eggplant) (Aubergine).
OH NCBI_TaxID=69266; Vaccinium corymbosum (Highbush blueberry).
OH NCBI_TaxID=3917; Vigna unguiculata (Cowpea).
OH NCBI_TaxID=29760; Vitis vinifera (Grape).
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC RNA], AND PARTIAL PROTEIN SEQUENCE.
RX PubMed=8109164; DOI=10.1016/0168-1702(93)90100-2;
RA Buckley B., Silva S., Singh S.;
RT "Nucleotide sequence and in vitro expression of the capsid protein gene of
RT tobacco ringspot virus.";
RL Virus Res. 30:335-349(1993).
RN [2]
RP ERRATUM OF PUBMED:8109164.
RX PubMed=7754671; DOI=10.1016/0168-1702(94)00087-s;
RA Buckley B., Silva S., Singh S.;
RL Virus Res. 35:111-111(1995).
RN [3]
RP X-RAY CRYSTALLOGRAPHY (3.5 ANGSTROMS).
RX PubMed=9519407; DOI=10.1016/s0969-2126(98)00018-5;
RA Chandrasekar V., Johnson J.E.;
RT "The structure of tobacco ringspot virus: a link in the evolution of
RT icosahedral capsids in the picornavirus superfamily.";
RL Structure 6:157-171(1998).
CC -!- SUBUNIT: The virus coat is formed of 60 copies of the coat protein.
CC -!- SUBCELLULAR LOCATION: Virion {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Virus Particle ExploreR db; Note=Icosahedral capsid
CC structure;
CC URL="https://viperdb.scripps.edu/Info_Page.php?VDB=1a6c";
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DR EMBL; L09205; AAA74963.1; -; Genomic_RNA.
DR PDB; 1A6C; X-ray; 3.50 A; A=3-515.
DR PDBsum; 1A6C; -.
DR SMR; Q88894; -.
DR PRIDE; Q88894; -.
DR EvolutionaryTrace; Q88894; -.
DR GO; GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR Gene3D; 2.60.120.20; -; 2.
DR InterPro; IPR005054; Nepo_coat.
DR InterPro; IPR005305; Nepo_coat_C.
DR InterPro; IPR005306; Nepo_coat_N.
DR InterPro; IPR029053; Viral_coat.
DR Pfam; PF03391; Nepo_coat; 1.
DR Pfam; PF03688; Nepo_coat_C; 1.
DR Pfam; PF03689; Nepo_coat_N; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Capsid protein; Direct protein sequencing; Virion.
FT PROPEP 1..2
FT /id="PRO_0000037131"
FT CHAIN 3..515
FT /note="Capsid protein"
FT /id="PRO_0000037132"
FT STRAND 12..19
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 29..34
FT /evidence="ECO:0007829|PDB:1A6C"
FT HELIX 35..41
FT /evidence="ECO:0007829|PDB:1A6C"
FT HELIX 44..53
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 59..65
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 75..83
FT /evidence="ECO:0007829|PDB:1A6C"
FT HELIX 87..90
FT /evidence="ECO:0007829|PDB:1A6C"
FT HELIX 96..99
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 105..111
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 117..121
FT /evidence="ECO:0007829|PDB:1A6C"
FT TURN 122..126
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 130..133
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 141..146
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 159..165
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 180..184
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 191..202
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 210..212
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 227..230
FT /evidence="ECO:0007829|PDB:1A6C"
FT HELIX 231..236
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 239..242
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 244..252
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 259..267
FT /evidence="ECO:0007829|PDB:1A6C"
FT HELIX 275..280
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 284..286
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 288..295
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 303..306
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 308..310
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 312..322
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 331..342
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 349..351
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 357..364
FT /evidence="ECO:0007829|PDB:1A6C"
FT TURN 369..371
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 388..394
FT /evidence="ECO:0007829|PDB:1A6C"
FT HELIX 398..404
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 406..418
FT /evidence="ECO:0007829|PDB:1A6C"
FT TURN 425..427
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 432..436
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 447..452
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 455..460
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 472..474
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 480..484
FT /evidence="ECO:0007829|PDB:1A6C"
FT TURN 489..491
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 494..510
FT /evidence="ECO:0007829|PDB:1A6C"
FT STRAND 512..515
FT /evidence="ECO:0007829|PDB:1A6C"
SQ SEQUENCE 515 AA; 57168 MW; 22084021EA349E96 CRC64;
MCAVTVVPDP TCCGTLSFKV PKDAKKGKHL GTFDIRQAIM DYGGLHSQEW CAKGIVNPTF
TVRMHAPRNA FAGLSIACTF DDYKRIDLPA LGNECPPSEM FELPTKVFML KDADVHEWQF
NYGELTGHGL CNWANVATQP TLYFFVASTN QVTMAADWQC IVTMHVDMGP VIDRFELNPT
MTWPIQLGDT FAIDRYYEAK EIKLDGSTSM LSISYNFGGP VKHSKKHAIS YSRAVMSRNL
GWSGTISGSV KSVSSLFCTA SFVIFPWECE APPTLRQVLW GPHQIMHGDG QFEIAIKTRL
HSAATTEEGF GRLGILPLSG PIAPDAHVGS YEFIVHINTW RPDSQVHPPM FSSSELYNWF
TLTNLKPDAN TGVVNFDIPG YIHDFASKDA TVTLASNPLS WLVAATGWHY GEVDLCISWS
RSKQAQAQEG SVSITTNYRD WGAYWQGQAR IYDLRRTEAE IPIFLGSYAG ATPSGALGKQ
NYVRISIVNA KDIVALRVCL RPKSIKFWGR SATLF
