Y2010_ARATH
ID Y2010_ARATH Reviewed; 374 AA.
AC P0C895; F4IMP8; O64736;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 1.
DT 03-AUG-2022, entry version 81.
DE RecName: Full=LRR repeats and ubiquitin-like domain-containing protein At2g30105;
GN OrderedLocusNames=At2g30105; ORFNames=T27E13.16;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14993207; DOI=10.1101/gr.1515604;
RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA Weissenbach J., Salanoubat M.;
RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT combined approach to evaluate and improve Arabidopsis genome annotation.";
RL Genome Res. 14:406-413(2004).
RN [4] {ECO:0007744|PDB:2KD0}
RP STRUCTURE BY NMR OF 11-85.
RA Swapna G.V.T., Shastry R., Foote E., Ciccosanti C., Jiang M., Xiao R.,
RA Nair R., Everett J., Huang Y., Acton T.B., Rost B., Montelione G.T.;
RT "NMR solution structure of O64736 protein from Arabidopsis thaliana.";
RL Submitted (DEC-2008) to the PDB data bank.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC16962.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At2g30100 and At2g30105.; Evidence={ECO:0000305};
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DR EMBL; AC004165; AAC16962.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002685; AEC08345.2; -; Genomic_DNA.
DR EMBL; BX819490; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; BX821459; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; T00588; T00588.
DR RefSeq; NP_001189636.2; NM_001202707.2.
DR PDB; 2KD0; NMR; -; A=11-85.
DR PDBsum; 2KD0; -.
DR AlphaFoldDB; P0C895; -.
DR BMRB; P0C895; -.
DR SMR; P0C895; -.
DR BioGRID; 1301786; 2.
DR STRING; 3702.AT2G30105.1; -.
DR iPTMnet; P0C895; -.
DR PaxDb; P0C895; -.
DR PRIDE; P0C895; -.
DR ProteomicsDB; 232413; -.
DR EnsemblPlants; AT2G30105.1; AT2G30105.1; AT2G30105.
DR GeneID; 10723124; -.
DR Gramene; AT2G30105.1; AT2G30105.1; AT2G30105.
DR KEGG; ath:AT2G30105; -.
DR Araport; AT2G30105; -.
DR eggNOG; KOG0619; Eukaryota.
DR HOGENOM; CLU_000288_18_15_1; -.
DR OMA; VEGWEEF; -.
DR OrthoDB; 1348484at2759; -.
DR EvolutionaryTrace; P0C895; -.
DR PRO; PR:P0C895; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; P0C895; baseline and differential.
DR Genevisible; P0C895; AT.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR001611; Leu-rich_rpt.
DR InterPro; IPR003591; Leu-rich_rpt_typical-subtyp.
DR InterPro; IPR032675; LRR_dom_sf.
DR InterPro; IPR000626; Ubiquitin-like_dom.
DR InterPro; IPR029071; Ubiquitin-like_domsf.
DR Pfam; PF13855; LRR_8; 1.
DR Pfam; PF00240; ubiquitin; 1.
DR SMART; SM00369; LRR_TYP; 4.
DR SMART; SM00213; UBQ; 1.
DR SUPFAM; SSF54236; SSF54236; 1.
DR PROSITE; PS51450; LRR; 6.
DR PROSITE; PS50053; UBIQUITIN_2; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Leucine-rich repeat; Reference proteome; Repeat.
FT CHAIN 1..374
FT /note="LRR repeats and ubiquitin-like domain-containing
FT protein At2g30105"
FT /id="PRO_0000355996"
FT DOMAIN 13..87
FT /note="Ubiquitin-like"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00214"
FT REPEAT 128..151
FT /note="LRR 1"
FT REPEAT 152..175
FT /note="LRR 2"
FT REPEAT 177..200
FT /note="LRR 3"
FT REPEAT 201..224
FT /note="LRR 4"
FT REPEAT 225..248
FT /note="LRR 5"
FT REPEAT 250..270
FT /note="LRR 6"
FT REPEAT 272..293
FT /note="LRR 7"
FT REPEAT 294..316
FT /note="LRR 8"
FT REPEAT 318..340
FT /note="LRR 9"
FT CONFLICT 156
FT /note="R -> K (in Ref. 3; BX819490)"
FT /evidence="ECO:0000305"
FT CONFLICT 327
FT /note="N -> K (in Ref. 3; BX821459)"
FT /evidence="ECO:0000305"
FT STRAND 13..19
FT /evidence="ECO:0007829|PDB:2KD0"
FT STRAND 22..28
FT /evidence="ECO:0007829|PDB:2KD0"
FT HELIX 34..45
FT /evidence="ECO:0007829|PDB:2KD0"
FT TURN 49..51
FT /evidence="ECO:0007829|PDB:2KD0"
FT STRAND 53..56
FT /evidence="ECO:0007829|PDB:2KD0"
FT TURN 67..71
FT /evidence="ECO:0007829|PDB:2KD0"
FT STRAND 76..81
FT /evidence="ECO:0007829|PDB:2KD0"
SQ SEQUENCE 374 AA; 41338 MW; 5DAA8185AEDFC11A CRC64;
MELEDPTMAD STIKLTVKFG GKSIPLSVSP DCTVKDLKSQ LQPITNVLPR GQKLIFKGKV
LVETSTLKQS DVGSGAKLML MASQGLHQGE GPILKEASIR PISRTVVSDK VDQRKPSVLV
DKNRTDRWKA TGVIALAQAN LKEIPEEVWD CGSGVRVLDI SENFIKEVPA KISSFGSMQK
LFLQGNGLSD ESIQWEGIAS LKRLMLLSIS HNNLTVLPSA MGSLTSLRQL DVTNNKLTSL
PNELGLLTQL EILKANNNRI TSLPESIGNC SFLMEVDLSA NIISELPETF TKLRNLKTLE
LNNTGLKTLP SALFKMCLQL STLGLHNTEI TVEFLRQFEG YDDFDERRRT KHQKQLDFRV
VGSGQFDEGA DKSW
