Y2070_ARATH
ID Y2070_ARATH Reviewed; 515 AA.
AC Q8VYC2; A0A1I9LS82; Q9LTR5;
DT 06-FEB-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2002, sequence version 1.
DT 25-MAY-2022, entry version 98.
DE RecName: Full=Putative BPI/LBP family protein At3g20270;
DE Flags: Precursor;
GN OrderedLocusNames=At3g20270; ORFNames=MQC12.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q8VYC2-1; Sequence=Displayed;
CC -!- SIMILARITY: Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP (TC
CC 1.C.40) family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB02808.1; Type=Erroneous gene model prediction; Note=The predicted gene At3g20270 has been split into 2 genes: At3g20270 and At3g20280.; Evidence={ECO:0000305};
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DR EMBL; AB024036; BAB02808.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE76355.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM65439.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM65440.1; -; Genomic_DNA.
DR EMBL; AY072195; AAL60017.1; -; mRNA.
DR RefSeq; NP_001327406.1; NM_001338469.1. [Q8VYC2-1]
DR RefSeq; NP_001327407.1; NM_001338468.1. [Q8VYC2-1]
DR RefSeq; NP_188662.3; NM_112918.5. [Q8VYC2-1]
DR AlphaFoldDB; Q8VYC2; -.
DR SMR; Q8VYC2; -.
DR STRING; 3702.AT3G20270.3; -.
DR PaxDb; Q8VYC2; -.
DR ProteomicsDB; 232393; -. [Q8VYC2-1]
DR EnsemblPlants; AT3G20270.2; AT3G20270.2; AT3G20270. [Q8VYC2-1]
DR EnsemblPlants; AT3G20270.4; AT3G20270.4; AT3G20270. [Q8VYC2-1]
DR EnsemblPlants; AT3G20270.5; AT3G20270.5; AT3G20270. [Q8VYC2-1]
DR GeneID; 821571; -.
DR Gramene; AT3G20270.2; AT3G20270.2; AT3G20270. [Q8VYC2-1]
DR Gramene; AT3G20270.4; AT3G20270.4; AT3G20270. [Q8VYC2-1]
DR Gramene; AT3G20270.5; AT3G20270.5; AT3G20270. [Q8VYC2-1]
DR KEGG; ath:AT3G20270; -.
DR Araport; AT3G20270; -.
DR eggNOG; KOG4160; Eukaryota.
DR HOGENOM; CLU_028970_0_0_1; -.
DR InParanoid; Q8VYC2; -.
DR OMA; AFINDSM; -.
DR PhylomeDB; Q8VYC2; -.
DR PRO; PR:Q8VYC2; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q8VYC2; baseline and differential.
DR Genevisible; Q8VYC2; AT.
DR GO; GO:0005615; C:extracellular space; IEA:InterPro.
DR GO; GO:0008289; F:lipid binding; IEA:InterPro.
DR InterPro; IPR017943; Bactericidal_perm-incr_a/b_dom.
DR InterPro; IPR030675; BPI/LBP.
DR InterPro; IPR045897; BPI/LBP_pln.
DR InterPro; IPR001124; Lipid-bd_serum_glycop_C.
DR InterPro; IPR017942; Lipid-bd_serum_glycop_N.
DR PANTHER; PTHR46801; PTHR46801; 1.
DR Pfam; PF01273; LBP_BPI_CETP; 1.
DR Pfam; PF02886; LBP_BPI_CETP_C; 1.
DR PIRSF; PIRSF002417; Lipid_binding_protein; 1.
DR SMART; SM00328; BPI1; 1.
DR SMART; SM00329; BPI2; 1.
DR SUPFAM; SSF55394; SSF55394; 2.
PE 2: Evidence at transcript level;
KW Alternative splicing; Glycoprotein; Reference proteome; Signal.
FT SIGNAL 1..59
FT /evidence="ECO:0000255"
FT CHAIN 60..515
FT /note="Putative BPI/LBP family protein At3g20270"
FT /id="PRO_0000274932"
FT CARBOHYD 147
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 188
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 267
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 278
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 346
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 374
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 408
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 441
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 515 AA; 56713 MW; 8D263402EEE5EF66 CRC64;
MYNSWFVLKQ KSNILLTILT SSLLAKFSYP STLFFFLEMA LMKVMTILVL FVSVSSTLAQ
SNNGGHISII VSETGLEFAK DYLIKKVITT TLPLQLPDIE NKVKIPLIGK VRMGLSNIQI
DAVHVQSSKM ETRKDGIILS VLGATANLSM DWSYTYRASF FEISDHGDAS VEVKGMNVRI
TATLVNDNGS LKIASRENDC TVKNIDIHIN GGASWLYQGV VDAFQKMIIS TVEKTVSTKI
VEKMKKLDSF LQSLPKQRKI DDSAAVNLTF TGNPVLGNSS VEVDINGLFM PKGDDIKVAG
SRSSSFFGGV NKRMVTISVE EGVFNSATLV YFNAKVMHLV MEETKNGSIL STSDWKLILP
ELYKHYPDNK MVLNMSVTSP PAVKITENGI DATIQLDIAF DVQDSGENLS VARLSTILSV
ACSTEIVKNN LIGSLRLNDF NATMKWSKIG EFQTNYVQAA TSRILEALFL PYVNTRLKRG
FPLPIPGDFT IKNIKIVYVN SGILVCTDIG TSTNQ
