Y2262_ARATH
ID Y2262_ARATH Reviewed; 286 AA.
AC Q9SIU9; Q84X35; Q84X36;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 89.
DE RecName: Full=UPF0725 protein At2g20620;
GN OrderedLocusNames=At2g20620; ORFNames=F23N11.6;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 3).
RC STRAIN=cv. Columbia;
RX PubMed=12481096; DOI=10.1104/pp.010207;
RA Xiao Y.-L., Malik M., Whitelaw C.A., Town C.D.;
RT "Cloning and sequencing of cDNAs for hypothetical genes from chromosome 2
RT of Arabidopsis.";
RL Plant Physiol. 130:2118-2128(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RA Underwood B.A., Xiao Y.-L., Moskal W.A. Jr., Monaghan E.L., Wang W.,
RA Redman J.C., Wu H.C., Utterback T., Town C.D.;
RL Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=3;
CC Name=1;
CC IsoId=Q9SIU9-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9SIU9-2; Sequence=VSP_036246;
CC Name=3;
CC IsoId=Q9SIU9-3; Sequence=VSP_036245;
CC -!- SIMILARITY: Belongs to the UPF0725 (EMB2204) family. {ECO:0000305}.
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DR EMBL; AC007048; AAD21705.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC07047.1; -; Genomic_DNA.
DR EMBL; AY219069; AAO37156.1; -; mRNA.
DR EMBL; AY219070; AAO37157.1; -; mRNA.
DR EMBL; AY773847; AAV63876.1; -; mRNA.
DR PIR; D84591; D84591.
DR RefSeq; NP_179653.1; NM_127625.2. [Q9SIU9-1]
DR AlphaFoldDB; Q9SIU9; -.
DR SMR; Q9SIU9; -.
DR PaxDb; Q9SIU9; -.
DR PRIDE; Q9SIU9; -.
DR EnsemblPlants; AT2G20620.1; AT2G20620.1; AT2G20620. [Q9SIU9-1]
DR GeneID; 816588; -.
DR Gramene; AT2G20620.1; AT2G20620.1; AT2G20620. [Q9SIU9-1]
DR KEGG; ath:AT2G20620; -.
DR Araport; AT2G20620; -.
DR TAIR; locus:2046051; AT2G20620.
DR HOGENOM; CLU_053767_2_3_1; -.
DR InParanoid; Q9SIU9; -.
DR OMA; GSLWRWD; -.
DR OrthoDB; 1295742at2759; -.
DR PhylomeDB; Q9SIU9; -.
DR PRO; PR:Q9SIU9; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9SIU9; baseline and differential.
DR Genevisible; Q9SIU9; AT.
DR InterPro; IPR046350; Cystatin_sf.
DR InterPro; IPR006462; MS5.
DR PANTHER; PTHR31260; PTHR31260; 1.
DR Pfam; PF04776; protein_MS5; 1.
DR SUPFAM; SSF54403; SSF54403; 1.
DR TIGRFAMs; TIGR01572; A_thl_para_3677; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome.
FT CHAIN 1..286
FT /note="UPF0725 protein At2g20620"
FT /id="PRO_0000363120"
FT REGION 1..49
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 17..36
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 83..286
FT /note="GTNLELMTVTQVMLQSVAHINYHMILDAFDPANNSLSSIEICLWDAAVKNNE
FT KLRLVTTFCSLEGSGDKGSQWDPNGVDVLYTGVMPKWLDDGALSGSEKLHYYEVNDSDL
FT QENKWLHLYAQVGAYSKWDLGMVKHFPLEIKKVVVQTMEDDIESNLKLKSSNAIFYITF
FT TTSGGVECACIIRQTRNGRPQHMCLEINNVEMDK -> VTLIYIALILASPHLYFFFFF
FT GF (in isoform 3)"
FT /evidence="ECO:0000303|PubMed:12481096"
FT /id="VSP_036245"
FT VAR_SEQ 147..286
FT /note="GSGDKGSQWDPNGVDVLYTGVMPKWLDDGALSGSEKLHYYEVNDSDLQENKW
FT LHLYAQVGAYSKWDLGMVKHFPLEIKKVVVQTMEDDIESNLKLKSSNAIFYITFTTSGG
FT VECACIIRQTRNGRPQHMCLEINNVEMDK -> VCCRVWR (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12481096, ECO:0000303|Ref.4"
FT /id="VSP_036246"
SQ SEQUENCE 286 AA; 31926 MW; 8151202B213204CC CRC64;
MVLETPVCSP IDKESSSDDV QLNKPPKKKR KLDVVYPPRD NTSSSSDVKP KVPGYCGVKA
IGCNRSDELL AEVALHSYNS QTGTNLELMT VTQVMLQSVA HINYHMILDA FDPANNSLSS
IEICLWDAAV KNNEKLRLVT TFCSLEGSGD KGSQWDPNGV DVLYTGVMPK WLDDGALSGS
EKLHYYEVND SDLQENKWLH LYAQVGAYSK WDLGMVKHFP LEIKKVVVQT MEDDIESNLK
LKSSNAIFYI TFTTSGGVEC ACIIRQTRNG RPQHMCLEIN NVEMDK