Y2608_ARATH
ID Y2608_ARATH Reviewed; 244 AA.
AC Q8GYJ2; Q9SIH6;
DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2003, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=B3 domain-containing protein At2g36080;
DE AltName: Full=Protein AUXIN RESPONSIVE FACTOR 31;
GN Name=ARF31; OrderedLocusNames=At2g36080; ORFNames=F9C22.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 16-244 (ISOFORM 2).
RC STRAIN=cv. Columbia;
RA Carabelli M., Ciarbelli A.R., Ruzza V., Sessa G., Steindler C., Ruberti I.;
RT "Nucleotide sequence of the putative Arabidopsis ARF31.";
RL Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006;
RA Swaminathan K., Peterson K., Jack T.;
RT "The plant B3 superfamily.";
RL Trends Plant Sci. 13:647-655(2008).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q8GYJ2-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q8GYJ2-2; Sequence=VSP_037330, VSP_037331;
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to an intron retention.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD26965.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=AAM15343.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=CAD29643.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC007017; AAM15343.1; ALT_INIT; Genomic_DNA.
DR EMBL; AC007135; AAD26965.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002685; AEC09203.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC09204.1; -; Genomic_DNA.
DR EMBL; CP002685; ANM62123.1; -; Genomic_DNA.
DR EMBL; AK117587; BAC42244.1; -; mRNA.
DR EMBL; AJ441075; CAD29643.1; ALT_INIT; mRNA.
DR PIR; F84776; F84776.
DR RefSeq; NP_001324302.1; NM_001336587.1. [Q8GYJ2-2]
DR RefSeq; NP_181152.2; NM_129167.3. [Q8GYJ2-2]
DR RefSeq; NP_850260.1; NM_179929.3. [Q8GYJ2-1]
DR AlphaFoldDB; Q8GYJ2; -.
DR SMR; Q8GYJ2; -.
DR BioGRID; 3525; 2.
DR STRING; 3702.AT2G36080.1; -.
DR PaxDb; Q8GYJ2; -.
DR PRIDE; Q8GYJ2; -.
DR EnsemblPlants; AT2G36080.1; AT2G36080.1; AT2G36080. [Q8GYJ2-1]
DR EnsemblPlants; AT2G36080.2; AT2G36080.2; AT2G36080. [Q8GYJ2-2]
DR EnsemblPlants; AT2G36080.4; AT2G36080.4; AT2G36080. [Q8GYJ2-2]
DR GeneID; 818181; -.
DR Gramene; AT2G36080.1; AT2G36080.1; AT2G36080. [Q8GYJ2-1]
DR Gramene; AT2G36080.2; AT2G36080.2; AT2G36080. [Q8GYJ2-2]
DR Gramene; AT2G36080.4; AT2G36080.4; AT2G36080. [Q8GYJ2-2]
DR KEGG; ath:AT2G36080; -.
DR Araport; AT2G36080; -.
DR TAIR; locus:2039165; AT2G36080.
DR eggNOG; KOG2580; Eukaryota.
DR HOGENOM; CLU_038898_3_1_1; -.
DR InParanoid; Q8GYJ2; -.
DR OMA; PHAGVQA; -.
DR PhylomeDB; Q8GYJ2; -.
DR PRO; PR:Q8GYJ2; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q8GYJ2; baseline and differential.
DR Genevisible; Q8GYJ2; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IDA:TAIR.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR044800; LEC2-like.
DR PANTHER; PTHR31140; PTHR31140; 1.
DR Pfam; PF02362; B3; 1.
DR SMART; SM01019; B3; 1.
DR SUPFAM; SSF101936; SSF101936; 1.
DR PROSITE; PS50863; B3; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..244
FT /note="B3 domain-containing protein At2g36080"
FT /id="PRO_0000375134"
FT DNA_BIND 38..144
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT VAR_SEQ 170..173
FT /note="AQAV -> TLFI (in isoform 2)"
FT /evidence="ECO:0000303|Ref.4"
FT /id="VSP_037330"
FT VAR_SEQ 174..244
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|Ref.4"
FT /id="VSP_037331"
SQ SEQUENCE 244 AA; 28435 MW; 5602781B6B12166F CRC64;
MSINQYSSDF HYHSLMWQQQ QQQQQHQNDV VEEKEALFEK PLTPSDVGKL NRLVIPKQHA
ERYFPLAAAA ADAVEKGLLL CFEDEEGKPW RFRYSYWNSS QSYVLTKGWS RYVKEKHLDA
GDVVLFHRHR SDGGRFFIGW RRRGDSSSSS DSYRHVQSNA SLQYYPHAGA QAVESQRGNS
KTLRLFGVNM ECQLDSDWSE PSTPDGSNTY TTNHDQFHFY PQQQHYPPPY YMDISFTGDM
NRTS
